Package: predictprotein Version: 1.1.09-2 Severity: severe Dear Maintainer,
predictprotein uses `$[ = 1` which is no longer supported with newer perl versions. Way to reproduce: Get the predictprotein source package, and cd there. Try running examples with predictprotein: $ cd examples $ predictprotein --seqfile p53.fasta --output-dir test Assigning non-zero to $[ is no longer possible at /usr/share/librg-utils-perl//copf.pl line 11. make: *** [/usr/share/predictprotein/MakefilePP.mk:475: query.fasta] Error 255 make --no-builtin-rules INFILE=query.in -C /tmp/9BCtEP40vL JOBID=query -j 1 BLASTCORES=1 LIBRGUTILS=/usr/share/librg-utils-perl/ PPROOT=/usr/share/predictprotein/ PROFNUMRESMIN=17 PROFROOT=/usr/share/profphd/prof/ BIGBLASTDB=/mnt/project/rost_db/data/blast/big BIG80BLASTDB=/mnt/project/rost_db/data/blast/big_80 PFAM2DB=/mnt/project/rost_db/data/pfam/Pfam_ls PFAM3DB=/mnt/project/rost_db/data/pfam/Pfam-A.hmm PROSITEDAT=/mnt/project/rost_db/data/prosite/prosite.dat PROSITECONVDAT=/mnt/project/rost_db/data/prosite/prosite_convert.dat PSICEXE=/usr/share/rost-runpsic/runNewPSIC.pl SPKEYIDX=/mnt/project/rost_db/data/swissprot/keyindex_loctree.txt SWISSBLASTDB=/mnt/project/rost_db/data/blast/swiss --quiet -f /usr/share/predictprotein/MakefilePP.mk all failed: 512 at /usr/bin/predictprotein line 393. Thanks -- System Information: Debian Release: bullseye/sid APT prefers unstable APT policy: (500, 'unstable'), (1, 'experimental') Architecture: amd64 (x86_64) Kernel: Linux 4.19.0-6-amd64 (SMP w/8 CPU cores) Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE=en_US.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /usr/bin/dash Init: systemd Versions of packages predictprotein depends on: ii bioperl 1.7.7-1 ii disulfinder 1.2.11-8 ii hmmer 3.3+dfsg2-1 ii hmmer2 2.3.2+dfsg-6 ii librg-exception-perl 1.0.3-4 ii librg-utils-perl 1.0.43-6 ii make 4.2.1-1.2 ii metastudent 2.0.1-8 ii ncbi-blast+-legacy 2.9.0-4 ii ncbi-seg 0.0.20000620-5 ii ncoils 2002-7 ii norsnet 1.0.17-6 ii norsp 1.0.6-4 ii perl 5.30.0-10 ii predictnls 1.0.20-6 ii profbval 1.0.22-6 ii profisis 1.0.11-5 ii profphd 1.0.42-3 ii proftmb 1.1.12-8+b1 ii reprof 1.0.1-7 predictprotein recommends no packages. Versions of packages predictprotein suggests: pn pp-cache-mgr <none> ii pp-popularity-contest 1.0.6-4+b1 pn predictprotein-nonfree <none> -- no debconf information