Apologies for my delayed response. We will investigate this and try to fix it soon. Regards Wei
Professor Wei Shi, PhD Head, Bioinformatics and Cancer Genomics Laboratory Olivia Newton-John Cancer Research Institute Level 5, ONJ Centre, 145 Studley Road, Heidelberg Vic 3084 Australia E: [email protected] | W: www.onjcri.org.au [signature_1837665025] From: Andreas Tille <[email protected]> Date: Wednesday, 23 September 2020 at 5:40 pm To: "[email protected]" <[email protected]>, Wei Shi <[email protected]>, Yang Liao <[email protected]>, Gordon K Smyth <[email protected]> Cc: Debian Mentors List <[email protected]>, Shayan Doust <[email protected]> Subject: Potential gcc-10 issue "error: conflicting types for ‘uintptr_t’" (Was: Bug#966523: r-bioc-rsubread FTBFS on 32bit: error: conflicting types for ‘uintptr_t’) Control: tags -1 help Control: tags -1 upstream Control: forwarded -1 Wei Shi <[email protected]<mailto:[email protected]>>, Yang Liao <[email protected]<mailto:[email protected]>>, Gordon K Smyth <[email protected]<mailto:[email protected]>> Hi, unfortunately upstream has not yet responded to this mail. My guess is that this is a general gcc-10 issue. Any hint how to solve this? Kind regards Andreas. On Tue, Sep 08, 2020 at 05:00:10PM +0200, Andreas Tille wrote: Hi, I'm hereby forwarding a problem that was detected on the Debian packaged version of Rsubread. Any idea how to fix this? Kind regards Andreas. On Thu, Jul 30, 2020 at 08:50:31AM +0300, Adrian Bunk wrote: > Source: r-bioc-rsubread > Version: 2.2.5-1 > Severity: serious > Tags: ftbfs > > https://buildd.debian.org/status/package.php?p=r-bioc-rsubread&suite=sid > > ... > In file included from /usr/lib/gcc/i686-linux-gnu/10/include/stdint.h:9, > from HelperFunctions.h:139, > from R_wrapper.c:35: > /usr/include/stdint.h:96:23: error: conflicting types for ‘uintptr_t’ > 96 | typedef unsigned int uintptr_t; > | ^~~~~~~~~ > In file included from R_wrapper.c:30: > /usr/share/R/include/Rinterface.h:110:24: note: previous declaration of > ‘uintptr_t’ was here > 110 | typedef unsigned long uintptr_t; > | ^~~~~~~~~ > make[1]: *** [/usr/lib/R/etc/Makeconf:167: R_wrapper.o] Error 1 -- http://fam-tille.de This communication is intended only for the named recipient and may contain information that is confidential, legally privileged or subject to copyright; the Olivia Newton-John Cancer Research Institute does not waiver any rights if you have received this communication in error. The views expressed in this communication are those of the sender and do not necessarily reflect the views of the Olivia Newton-John Cancer Research Institute.
