Control: tags -1 help
Hi, since version 0.7.0 (uploaded by Dylan Aïssi in CC) the autopkgtest
of r-cran-bayestestr fails with the error mentioned in the bug log. It
has slightly changed with the version I pushed to Git. It is now:
> library(bayestestR)
>
> if (length(strsplit(packageDescription("bayestestR")$Version, "\\.")[[1]]) >
> 3) {
+ Sys.setenv("RunAllbayestestRTests" = "yes")
+ } else {
+ Sys.setenv("RunAllbayestestRTests" = "no")
o
+ }
n
>
>
> s
> test_check("bayestestR")
*** caught segfault ***
address 0x7f9f3d27b008, cause 'invalid permissions'
n
Traceback:
1: dyn.load(file, DLLpath = DLLpath, ...)
2: library.dynam(lib, package, package.lib)
3: loadNamespace(package, lib.loc)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns <-
loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos, deps,
exclude, include.only)}, error = function(e) { P <- if (!is.null(cc <-
conditionCall(e))) paste(" in", deparse(cc)[1L]) else "" msg <-
gettextf("package or namespace load failed for %s%s:\n %s",
sQuote(package), P, conditionMessage(e)) if (logical.return)
message(paste("Error:", msg), domain = NA) else stop(msg, call. = FALSE,
domain = NA)})
8: library(package, lib.loc = lib.loc, character.only = TRUE, logical.return =
TRUE, warn.conflicts = warn.conflicts, quietly = quietly, mask.ok =
mask.ok, exclude = exclude, include.only = include.only, attach.required =
attach.required)
9: doTryCatch(return(expr), name, parentenv, handler)
10: tryCatchOne(expr, names, parentenv, handlers[[1L]])
11: tryCatchList(expr, classes, parentenv, handlers)
12: tryCatch(library(package, lib.loc = lib.loc, character.only = TRUE,
logical.return = TRUE, warn.conflicts = warn.conflicts, quietly = quietly,
mask.ok = mask.ok, exclude = exclude, include.only = include.only,
attach.required = attach.required), error = function(e) e)
13: require("rstanarm")
14: eval(code, test_env)
15: eval(code, test_env)
16: withCallingHandlers({ eval(code, test_env) if (!handled &&
!is.null(test)) { skip_empty() }}, expectation = handle_expectation,
skip = handle_skip, warning = handle_warning, message = handle_message,
error = handle_error)
17: doTryCatch(return(expr), name, parentenv, handler)
18: tryCatchOne(expr, names, parentenv, handlers[[1L]])
19: tryCatchList(expr, names[-nh], parentenv, handlers[-nh])
20: doTryCatch(return(expr), name, parentenv, handler)
o
21: tryCatchOne(tryCatchList(expr, names[-nh], parentenv, handlers[-nh]),
names[nh], parentenv, handlers[[nh]])
n
22: tryCatchList(expr, classes, parentenv, handlers)
s
23: tryCatch(withCallingHandlers({ eval(code, test_env) if (!handled &&
!is.null(test)) { skip_empty() }}, expectation = handle_expectation,
skip = handle_skip, warning = handle_warning, message = handle_message,
error = handle_error), error = handle_fatal, skip = function(e) { })
24: test_code(NULL, exprs, env)
25: source_file(path, child_env(env), wrap = wrap)
n
26: FUN(X[[i]], ...)
27: lapply(test_paths, test_one_file, env = env, wrap = wrap)
28: force(code)
29: doWithOneRestart(return(expr), restart)
30: withOneRestart(expr, restarts[[1L]])
31: withRestarts(testthat_abort_reporter = function() NULL, force(code))
32: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env =
env, wrap = wrap))
33: test_files(test_dir = test_dir, test_package = test_package, test_paths
= test_paths, load_helpers = load_helpers, reporter = reporter, env = env,
stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap
= wrap, load_package = load_package)
34: test_files(test_dir = path, test_paths = test_paths, test_package =
package, reporter = reporter, load_helpers = load_helpers, env = env,
stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, wrap
= wrap, load_package = load_package, parallel = parallel)
35: test_dir("testthat", package = package, reporter = reporter, ...,
load_package = "installed")
36: test_check("bayestestR")
An irrecoverable exception occurred. R is aborting now ...
Segmentation fault
autopkgtest [10:57:07]: test run-unit-test: -----------------------]
autopkgtest [10:57:07]: test run-unit-test: - - - - - - - - - - results - - -
- - - - - - -
run-unit-test FAIL non-zero exit status 139
autopkgtest [10:57:07]: @@@@@@@@@@@@@@@@@@@@ summary
run-unit-test FAIL non-zero exit status 139
I do not have the slightest idea what this might mean. If nobody has
any clue we should probably ask upstream about this.
Kind regards
Andreas.
--
http://fam-tille.de
