Hi Andreas,
On Thu, 3 Dec 2020 14:18:08 +0100 Andreas Tille <andr...@fam-tille.de> wrote:
> ======================================================================
> ERROR: test_q_score (q2_quality_filter.test.test_filter.FilterTests)
> ----------------------------------------------------------------------
> Traceback (most recent call last):
> File
> "/tmp/autopkgtest.Oa4qOC/autopkgtest_tmp/q2_quality_filter/test/test_filter.py",
> line 108, in test_q_score
> with redirected_stdio(stdout=os.devnull):
> File "/usr/lib/python3.9/contextlib.py", line 117, in __enter__
> return next(self.gen)
> File "/usr/lib/python3/dist-packages/qiime2/util.py", line 24, in
> redirected_stdio
> with _redirected_fd(to=stdout, stdio=sys.stdout):
> File "/usr/lib/python3.9/contextlib.py", line 117, in __enter__
> return next(self.gen)
> File "/usr/lib/python3/dist-packages/qiime2/util.py", line 43, in
> _redirected_fd
> stdio_fd = _get_fileno(stdio)
> File "/usr/lib/python3/dist-packages/qiime2/util.py", line 64, in
> _get_fileno
> fd = getattr(file_or_fd, 'fileno', lambda: file_or_fd)()
> io.UnsupportedOperation: fileno
> -------------------- >> begin captured logging << --------------------
> bibtexparser.bparser: DEBUG: Found Entry: ['Article', 'Bolyen2019', {'url':
> 'https://doi.org/10.1038/s41587-019-0209-9', 'doi':
> '10.1038/s41587-019-0209-9', 'issn': '1546-1696', 'pages': '852The autopkgtest uses nosetests3, which does not cope with the pytest-3 decorators. Moving to py.test-3 solves this without impeding the test coverage it seems. I'll run a few tests to make sure everything is okay, then I'll push to Salsa and, it should be ready for upload. Cheers, -- Étienne Mollier <etienne.moll...@mailoo.org> Fingerprint: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da Sent from /dev/pts/5, please excuse my verbosity.
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