Source: r-cran-rstan
Version: 2.21.2-2
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20201226 ftbfs-bullseye
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include"
> -I"../inst/include/boost_not_in_BH" -I"." -DBOOST_DISABLE_ASSERTS
> -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT
> -DSTAN_THREADS -I'/usr/lib/R/site-library/Rcpp/include'
> -I'/usr/lib/R/site-library/RcppEigen/include'
> -I'/usr/lib/R/site-library/BH/include'
> -I'/usr/lib/R/site-library/StanHeaders/include'
> -I'/usr/lib/R/site-library/RcppParallel/include' -fpic -g -O2
> -fdebug-prefix-map=/build/r-base-oKyfjH/r-base-4.0.3=.
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -c Module.cpp -o Module.o
> In file included from
> /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:397,
> from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/meta/append_return_type.hpp:4,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/meta.hpp:9,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/memory/stack_alloc.hpp:7,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/core/autodiffstackstorage.hpp:4,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/core.hpp:4,
> from ./stan/model/model_base.hpp:5,
> from Module.cpp:2:
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39:
> warning: ignoring attributes on template argument ‘__m128’
> [-Wignored-attributes]
> 60 | template<> struct is_arithmetic<__m128> { enum { value = true }; };
> | ^
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40:
> warning: ignoring attributes on template argument ‘__m128i’
> [-Wignored-attributes]
> 61 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
> | ^
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40:
> warning: ignoring attributes on template argument ‘__m128d’
> [-Wignored-attributes]
> 62 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
> | ^
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
> 161 | template<> struct unpacket_traits<Packet4f> { typedef float type;
> enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
> | ^
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
> 162 | template<> struct unpacket_traits<Packet2d> { typedef double type;
> enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
> | ^
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes]
> 163 | template<> struct unpacket_traits<Packet4i> { typedef int type;
> enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
> | ^
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
> 718 | struct palign_impl<Offset,Packet4f>
> | ^
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes]
> 741 | struct palign_impl<Offset,Packet4i>
> | ^
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
> 764 | struct palign_impl<Offset,Packet2d>
> | ^
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
> 778 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
> | ^
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
> 783 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
> | ^
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::Packet4i’ {aka ‘__m128i’} [-Wignored-attributes]
> 790 | ptranspose(PacketBlock<Packet4i,4>& kernel) {
> | ^
> In file included from
> /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:377,
> from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/meta/append_return_type.hpp:4,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/meta.hpp:9,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/memory/stack_alloc.hpp:7,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/core/autodiffstackstorage.hpp:4,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/core.hpp:4,
> from ./stan/model/model_base.hpp:5,
> from Module.cpp:2:
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
> 15 | template<> struct conj_helper<PACKET_REAL, PACKET_CPLX,
> false,false> { \
> | ^
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1:
> note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
> 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes]
> 22 | template<> struct conj_helper<PACKET_CPLX, PACKET_REAL,
> false,false> { \
> | ^
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1:
> note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
> 232 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
> 15 | template<> struct conj_helper<PACKET_REAL, PACKET_CPLX,
> false,false> { \
> | ^
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1:
> note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
> 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes]
> 22 | template<> struct conj_helper<PACKET_CPLX, PACKET_REAL,
> false,false> { \
> | ^
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1:
> note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
> 417 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> In file included from
> /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:370,
> from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/meta/append_return_type.hpp:4,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/meta.hpp:9,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/memory/stack_alloc.hpp:7,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/core/autodiffstackstorage.hpp:4,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/core.hpp:4,
> from ./stan/model/model_base.hpp:5,
> from Module.cpp:2:
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In
> instantiation of ‘struct Eigen::internal::find_best_packet<float, 4>’:
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:
> required from ‘struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49:
> required from ‘struct Eigen::internal::traits<Eigen::Quaternion<float> >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46:
> required from here
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’}
> [-Wignored-attributes]
> 187 | bool Stop = Size==Dynamic ||
> (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename
> unpacket_traits<PacketType>::half>::value>
> |
> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’}
> [-Wignored-attributes]
> 187 | bool Stop = Size==Dynamic ||
> (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename
> unpacket_traits<PacketType>::half>::value>
> |
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’}
> [-Wignored-attributes]
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’}
> [-Wignored-attributes]
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’}
> [-Wignored-attributes]
> 205 | typedef typename find_best_packet_helper<Size,typename
> packet_traits<T>::type>::type type;
> |
> ^~~~
> In file included from
> /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:439,
> from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/meta/append_return_type.hpp:4,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/meta.hpp:9,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/memory/stack_alloc.hpp:7,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/core/autodiffstackstorage.hpp:4,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/core.hpp:4,
> from ./stan/model/model_base.hpp:5,
> from Module.cpp:2:
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:
> In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>,
> 0>’:
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:
> required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:
> required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:
> required from ‘class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:
> required from ‘class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:
> required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:
> required from ‘class Eigen::Matrix<float, 4, 1>’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:
> required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<float> >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:
> required from ‘class Eigen::Quaternion<float>’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3:
> required from here
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::packet_traits<float>::type’ {aka ‘__m128’}
> [-Wignored-attributes]
> 55 | >::type PacketReturnType;
> | ^~~~~~~~~~~~~~~~
> In file included from
> /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:370,
> from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/meta/append_return_type.hpp:4,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/meta.hpp:9,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/memory/stack_alloc.hpp:7,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/core/autodiffstackstorage.hpp:4,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/core.hpp:4,
> from ./stan/model/model_base.hpp:5,
> from Module.cpp:2:
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In
> instantiation of ‘struct Eigen::internal::find_best_packet<double, 4>’:
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:
> required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:243:49:
> required from ‘struct Eigen::internal::traits<Eigen::Quaternion<double> >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47:
> required from here
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’}
> [-Wignored-attributes]
> 187 | bool Stop = Size==Dynamic ||
> (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename
> unpacket_traits<PacketType>::half>::value>
> |
> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’}
> [-Wignored-attributes]
> 187 | bool Stop = Size==Dynamic ||
> (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename
> unpacket_traits<PacketType>::half>::value>
> |
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’}
> [-Wignored-attributes]
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’}
> [-Wignored-attributes]
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’}
> [-Wignored-attributes]
> 205 | typedef typename find_best_packet_helper<Size,typename
> packet_traits<T>::type>::type type;
> |
> ^~~~
> In file included from
> /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:439,
> from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/meta/append_return_type.hpp:4,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/meta.hpp:9,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/memory/stack_alloc.hpp:7,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/core/autodiffstackstorage.hpp:4,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/core.hpp:4,
> from ./stan/model/model_base.hpp:5,
> from Module.cpp:2:
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:
> In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4,
> 1>, 0>’:
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:
> required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>,
> 1>’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:
> required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>,
> 3>’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:
> required from ‘class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:
> required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:
> required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:
> required from ‘class Eigen::Matrix<double, 4, 1>’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50:
> required from ‘class Eigen::QuaternionBase<Eigen::Quaternion<double> >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:250:7:
> required from ‘class Eigen::Quaternion<double>’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3:
> required from here
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’}
> [-Wignored-attributes]
> 55 | >::type PacketReturnType;
> | ^~~~~~~~~~~~~~~~
> In file included from
> /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:370,
> from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/meta/append_return_type.hpp:4,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/meta.hpp:9,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/memory/stack_alloc.hpp:7,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/core/autodiffstackstorage.hpp:4,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/core.hpp:4,
> from ./stan/model/model_base.hpp:5,
> from Module.cpp:2:
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In
> instantiation of ‘struct Eigen::internal::find_best_packet<double, -1>’:
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:
> required from ‘struct Eigen::internal::traits<Eigen::Matrix<double, -1, -1> >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:
> required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1>
> >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:
> required from ‘class Eigen::Matrix<double, -1, -1>’
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/mat/fun/typedefs.hpp:11:72:
> required from here
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:44:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’}
> [-Wignored-attributes]
> 187 | bool Stop = Size==Dynamic ||
> (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename
> unpacket_traits<PacketType>::half>::value>
> |
> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’}
> [-Wignored-attributes]
> 187 | bool Stop = Size==Dynamic ||
> (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename
> unpacket_traits<PacketType>::half>::value>
> |
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’}
> [-Wignored-attributes]
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:187:83:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’}
> [-Wignored-attributes]
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:205:88:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’}
> [-Wignored-attributes]
> 205 | typedef typename find_best_packet_helper<Size,typename
> packet_traits<T>::type>::type type;
> |
> ^~~~
> In file included from
> /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:439,
> from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/meta/append_return_type.hpp:4,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/meta.hpp:9,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/memory/stack_alloc.hpp:7,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/core/autodiffstackstorage.hpp:4,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/core.hpp:4,
> from ./stan/model/model_base.hpp:5,
> from Module.cpp:2:
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:
> In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1,
> -1>, 0>’:
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:
> required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>,
> 1>’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:
> required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>,
> 3>’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:
> required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, -1> >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:
> required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1> >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:
> required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1>
> >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:
> required from ‘class Eigen::Matrix<double, -1, -1>’
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/mat/fun/typedefs.hpp:11:72:
> required from here
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’}
> [-Wignored-attributes]
> 55 | >::type PacketReturnType;
> | ^~~~~~~~~~~~~~~~
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:
> In instantiation of ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1,
> 1>, 0>’:
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:
> required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>,
> 1>’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:
> required from ‘class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>,
> 3>’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:
> required from ‘class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:
> required from ‘class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:
> required from ‘class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:
> required from ‘class Eigen::Matrix<double, -1, 1>’
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/mat/meta/operands_and_partials.hpp:20:14:
> required from here
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’}
> [-Wignored-attributes]
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:
> In instantiation of ‘class
> Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>,
> Eigen::Matrix<double, -1, 1> >, 0>’:
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:
> required from ‘class
> Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>,
> Eigen::Matrix<double, -1, 1> > >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:
> required from ‘class
> Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>,
> Eigen::Matrix<double, -1, 1> > >’
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7:
> required from ‘class
> Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>,
> Eigen::Matrix<double, -1, 1> >’
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/mat/meta/operands_and_partials.hpp:23:45:
> required from here
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30:
> warning: ignoring attributes on template argument
> ‘Eigen::internal::packet_traits<double>::type’ {aka ‘__m128d’}
> [-Wignored-attributes]
> In file included from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/core.hpp:16,
> from ./stan/model/model_base.hpp:5,
> from Module.cpp:2:
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:200:77:
> error: wrong number of template arguments (8, should be 9)
> 200 | RhsStorageOrder, ConjugateRhs,
> ColMajor> {
> |
> ^
> In file included from
> /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:454,
> from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/meta/append_return_type.hpp:4,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/meta.hpp:9,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/memory/stack_alloc.hpp:7,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/core/autodiffstackstorage.hpp:4,
> from
> /usr/lib/R/site-library/StanHeaders/include/stan/math/rev/core.hpp:4,
> from ./stan/model/model_base.hpp:5,
> from Module.cpp:2:
> /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/BlasUtil.h:35:8:
> note: provided for ‘template<class Index, class LhsScalar, int
> LhsStorageOrder, bool ConjugateLhs, class RhsScalar, int RhsStorageOrder,
> bool ConjugateRhs, int ResStorageOrder, int ResInnerStride> struct
> Eigen::internal::general_matrix_matrix_product’
> 35 | struct general_matrix_matrix_product;
> | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> make[1]: *** [/usr/lib/R/etc/Makeconf:181: Module.o] Error 1
The full build log is available from:
http://qa-logs.debian.net/2020/12/26/r-cran-rstan_2.21.2-2_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with me
so that we can identify if something relevant changed in the meantime.
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
