Source: dolfin
Version: 2019.2.0~git20200629.946dbd3+lfs-4
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20201226 ftbfs-bullseye
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/dolfin" && /usr/bin/c++
> -DDOLFIN_VERSION=\"2019.2.0.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI
> -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -Ddolfin_EXPORTS -I"/<<PKGBUILDDIR>>"
> -I"/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" -isystem
> /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/eigen3
> -isystem /usr/include/hdf5/openmpi -isystem /usr/include/suitesparse -isystem
> /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
> /usr/lib/x86_64-linux-gnu/openmpi/include -fpermissive -g -O2
> -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
> -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -Wformat -Werror=format-security -O2 -g -DNDEBUG
> -fPIC -std=c++11 -o
> CMakeFiles/dolfin.dir/fem/MixedLinearVariationalSolver.cpp.o -c
> "/<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp"
> /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp: In member
> function ‘void
> dolfin::MixedLinearVariationalSolver::solve(dolfin::MixedLinearVariationalSolver::assembled_system_type)’:
> /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:240:23: error:
> variable ‘dolfin::PETScNestMatrix A’ has initializer but incomplete type
> 240 | PETScNestMatrix A(As);
> | ^
> /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:281:5: error:
> ‘PETScLUSolver’ was not declared in this scope
> 281 | PETScLUSolver solver(comm, solver_type);
> | ^~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:285:5: error:
> ‘solver’ was not declared in this scope; did you mean ‘solve’?
> 285 | solver.set_operator(A);
> | ^~~~~~
> | solve
> /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:290:5: error:
> ‘PETScKrylovSolver’ was not declared in this scope
> 290 | PETScKrylovSolver solver(comm, solver_type, pc_type);
> | ^~~~~~~~~~~~~~~~~
> /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:291:5: error:
> ‘solver’ was not declared in this scope; did you mean ‘solve’?
> 291 | solver.parameters.update(parameters("krylov_solver"));
> | ^~~~~~
> | solve
> /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:303:13: error:
> ‘PETScVector’ was not declared in this scope
> 303 | as_type<PETScVector>(u)->update_ghost_values();
> | ^~~~~~~~~~~
> /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:303:27: error:
> no matching function for call to ‘as_type<<expression error>
> >(std::shared_ptr<dolfin::GenericVector>&)’
> 303 | as_type<PETScVector>(u)->update_ghost_values();
> | ^
> In file included from /<<PKGBUILDDIR>>/dolfin/la/GenericTensor.h:38,
> from /<<PKGBUILDDIR>>/dolfin/la/GenericMatrix.h:34,
> from
> /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:27:
> /<<PKGBUILDDIR>>/dolfin/la/LinearAlgebraObject.h:64:8: note: candidate:
> ‘template<class Y, class X> Y& dolfin::as_type(X&)’
> 64 | Y& as_type(X& x)
> | ^~~~~~~
> /<<PKGBUILDDIR>>/dolfin/la/LinearAlgebraObject.h:64:8: note: template
> argument deduction/substitution failed:
> /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:303:27: error:
> template argument 1 is invalid
> 303 | as_type<PETScVector>(u)->update_ghost_values();
> | ^
> In file included from /<<PKGBUILDDIR>>/dolfin/la/GenericTensor.h:38,
> from /<<PKGBUILDDIR>>/dolfin/la/GenericMatrix.h:34,
> from
> /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:27:
> /<<PKGBUILDDIR>>/dolfin/la/LinearAlgebraObject.h:84:24: note: candidate:
> ‘template<class Y, class X> std::shared_ptr<_Tp>
> dolfin::as_type(std::shared_ptr<_Tp>)’
> 84 | std::shared_ptr<Y> as_type(std::shared_ptr<X> x)
> | ^~~~~~~
> /<<PKGBUILDDIR>>/dolfin/la/LinearAlgebraObject.h:84:24: note: template
> argument deduction/substitution failed:
> /<<PKGBUILDDIR>>/dolfin/fem/MixedLinearVariationalSolver.cpp:303:27: error:
> template argument 1 is invalid
> 303 | as_type<PETScVector>(u)->update_ghost_values();
> | ^
> make[4]: *** [dolfin/CMakeFiles/dolfin.dir/build.make:618:
> dolfin/CMakeFiles/dolfin.dir/fem/MixedLinearVariationalSolver.cpp.o] Error 1
The full build log is available from:
http://qa-logs.debian.net/2020/12/26/dolfin_2019.2.0~git20200629.946dbd3+lfs-4_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with me
so that we can identify if something relevant changed in the meantime.
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
