Package: pigx-rnaseq Version: 0.0.10+ds-2 Severity: normal Tags: patch User: [email protected] Usertags: usrmerge X-Debbugs-Cc: [email protected], [email protected]
Dear Maintainer, When built on usrmerge system, the binaries gunzip and sed end up having different paths i.e. /bin/foo and /usr/bin/foo In order to mitigate this, it can be passed directly to configure so that the location is ascertained. The patch for the same is commited into salsa here[1] This should be ready for upload after bullseye release. I am reporting bug so that this change is not lost somehow. [1]: https://salsa.debian.org/med-team/pigx-rnaseq/-/commit/70b31a920f5985c70214f77e47a5e3b26ee42f07 Nilesh -- System Information: Debian Release: bullseye/sid APT prefers unstable APT policy: (500, 'unstable'), (1, 'experimental') Architecture: amd64 (x86_64) Kernel: Linux 5.7.0-2-amd64 (SMP w/8 CPU threads) Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set Shell: /bin/sh linked to /usr/bin/dash Init: unable to detect Versions of packages pigx-rnaseq depends on: pn fastqc <none> ii libjs-jquery-datatables 1.10.21+dfsg-1 ii libjs-jquery-tablesorter 1:2.31.3+dfsg1-1 pn multiqc <none> pn pandoc-citeproc <none> ii python3 3.9.1-1 pn python3-deeptools <none> pn python3-htseq <none> pn r-bioc-deseq2 <none> pn r-bioc-rtracklayer <none> pn r-bioc-summarizedexperiment <none> pn r-bioc-tximport <none> pn r-cran-corrplot <none> ii r-cran-crosstalk 1.1.0.1+dfsg-3 ii r-cran-data.table 1.13.0+dfsg-1 ii r-cran-dt 0.15+dfsg-2 ii r-cran-ggplot2 3.3.2+dfsg-2 pn r-cran-ggrepel <none> pn r-cran-gprofiler <none> pn r-cran-pheatmap <none> pn r-cran-plotly <none> pn r-cran-reshape2 <none> pn r-cran-rjson <none> ii r-cran-rlang 0.4.7-1 ii r-cran-rmarkdown 2.3+dfsg-2 ii r-cran-scales 1.1.1-1 pn rna-star <none> pn salmon <none> ii samtools 1.10-4 ii snakemake 5.24.1-1 pn trim-galore <none> pigx-rnaseq recommends no packages. pigx-rnaseq suggests no packages.
