Package: wnpp Severity: wishlist Subject: ITP: shark -- Mapping-free filtering of useless RNA-Seq reads Package: wnpp Owner: Steffen Moeller <moel...@debian.org> Severity: wishlist
* Package name : shark Version : 1.2.0 Upstream Author : Copyright:2019 Tamara Ceccato, Luca Denti, Yuri Pirola, Marco Previtali * URL : https://algolab.github.io/shark/ * License : GPL-3.0+ Programming Lang: C Description : Mapping-free filtering of useless RNA-Seq reads For RNA-seq, to determine the identity of a gene that is described by a read, one maps it against a reference genome. Now, such may not be available, or one has an special variant that would make it too lossy to perform the mapping. This tool allows to filter for those reads that have a redundancy between themselves, i.e. that occur more frequently and are hence likely to be meaningful for subsequent comparisons. Remark: This package is maintained by Steffen Moeller at https://salsa.debian.org/debian/shark