Thanks a lot Pierre! Am Fri, Jan 21, 2022 at 09:25:13PM +0100 schrieb Pierre Gruet: > Package: wnpp > Severity: wishlist > Owner: Debian-med team <debian-...@lists.debian.org> > X-Debbugs-Cc: debian-de...@lists.debian.org, debian-...@lists.debian.org > > * Package name : malt > Version : 0.5.2 > Upstream Author : Daniel Huson <daniel.hu...@uni-tuebingen.de> > * URL : https://github.com/danielhuson/malt > * License : GPL-3+ > Programming Lang: Java > Description : sequence alignment and analysis tool to process > sequencing data > > MALT, an acronym for MEGAN alignment tool, is a sequence alignment and > analysis tool designed for processing high-throughput sequencing data, > especially in the context of metagenomics. It is an extension of MEGAN6, > the MEGenome Analyzer and is designed to provide the input for MEGAN6, > but can also be used independently of MEGAN6. > > The core of the program is a sequence alignment engine that aligns DNA > or protein sequences to a DNA or protein reference database in either > BLASTN (DNA queries and DNA references), BLASTX (DNA queries and protein > references) or BLASTP (protein queries and protein references) mode. The > engine uses a banded-alignment algorithm with ane gap scores and BLOSUM > substitution matrices (in the case of protein alignments). The program > can compute both local alignments (Smith-Waterman) or semi-global > alignments (in which reads are aligned end-to-end into reference > sequences), the latter being more appropriate for aligning metagenomic > reads to references. > > The package will be team-maintained in Debian-med team. > >
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