Source: pyparsing, cwltool Control: found -1 pyparsing/3.0.7-1 Control: found -1 cwltool/3.1.20211104071347-3 Severity: serious Tags: sid bookworm X-Debbugs-CC: [email protected] User: [email protected] Usertags: breaks needs-update
Dear maintainer(s),With a recent upload of pyparsing the autopkgtest of cwltool fails in testing when that autopkgtest is run with the binary packages of pyparsing from unstable. It passes when run with only packages from testing. In tabular form:
pass fail
pyparsing from testing 3.0.7-1
cwltool from testing 3.1.20211104071347-3
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration of pyparsing to
testing [1]. Due to the nature of this issue, I filed this bug report
against both packages. Can you please investigate the situation and
reassign the bug to the right package? I note that cwltool is newer in
unstable. I haven't tested if that "solves" the issue as the package is
blocked from migrating currently.
More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation Paul [1] https://qa.debian.org/excuses.php?package=pyparsing https://ci.debian.net/data/autopkgtest/testing/amd64/c/cwltool/19310147/log.gz=================================== FAILURES =================================== ________________________________ test_print_dot ________________________________
[gw14] linux -- Python 3.9.10 /usr/bin/python3
def test_print_dot() -> None:
# print Workflow
cwl_path = get_data("tests/wf/revsort.cwl")
cwl_posix_path = Path(cwl_path).as_posix()
expected_dot = pydot.graph_from_dot_data(
"""
digraph {{
graph [bgcolor="#eeeeee",
clusterrank=local,
labeljust=right,
labelloc=bottom
];
subgraph cluster_inputs {{
graph [label="Workflow Inputs",
rank=same,
style=dashed
];
"file://{cwl_posix_path}#workflow_input"
[fillcolor="#94DDF4",
label=workflow_input,
style=filled];
"file://{cwl_posix_path}#reverse_sort"
[fillcolor="#94DDF4",
label=reverse_sort,
style=filled];
}}
subgraph cluster_outputs {{
graph [label="Workflow Outputs",
labelloc=b,
rank=same,
style=dashed
];
"file://{cwl_posix_path}#sorted_output"
[fillcolor="#94DDF4",
label=sorted_output,
style=filled];
}}
"file://{cwl_posix_path}#rev" [fillcolor=lightgoldenrodyellow,
label=rev,
style=filled];
"file://{cwl_posix_path}#sorted"
[fillcolor=lightgoldenrodyellow,
label=sorted,
style=filled];
"file://{cwl_posix_path}#rev" ->
"file://{cwl_posix_path}#sorted";
"file://{cwl_posix_path}#sorted" ->
"file://{cwl_posix_path}#sorted_output";
"file://{cwl_posix_path}#workflow_input" ->
"file://{cwl_posix_path}#rev";
"file://{cwl_posix_path}#reverse_sort" ->
"file://{cwl_posix_path}#sorted";
}}
""".format(
cwl_posix_path=cwl_posix_path
)
)[0]
stdout = StringIO()
assert main(["--debug", "--print-dot", cwl_path], stdout=stdout) == 0
E AssertionError: assert 1 == 0E + where 1 = main(['--debug', '--print-dot', '/usr/lib/python3/dist-packages/cwltool/tests/wf/revsort.cwl'], stdout=<_io.StringIO object at 0x7f634cc60550>)
/usr/lib/python3/dist-packages/cwltool/tests/test_examples.py:1083: AssertionError
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