Hi again, Am Sat, Feb 19, 2022 at 12:28:21AM -0800 schrieb Chris Chang: > Ok, new release/tag created.
I've built the new version now. The bad news is that it keeps on SEGFAULTing for me: ... (gdb) run Starting program: /usr/lib/plink2/plink2-sse3 --debug --pfile tmp_data --export vcf vcf-dosage=DS --out tmp_data2 [Thread debugging using libthread_db enabled] Using host libthread_db library "/lib/x86_64-linux-gnu/libthread_db.so.1". [New Thread 0x7ffff4cc7640 (LWP 985019)] [New Thread 0x7ffff44c6640 (LWP 985020)] [New Thread 0x7fffebcc5640 (LWP 985021)] PLINK v2.00a3 64-bit (17 Feb 2022) www.cog-genomics.org/plink/2.0/ (C) 2005-2022 Shaun Purcell, Christopher Chang GNU General Public License v3 Logging to tmp_data2.log. Options in effect: --debug --export vcf vcf-dosage=DS --out tmp_data2 --pfile tmp_data Start time: Sat Feb 19 16:00:00 2022 31998 MiB RAM detected; reserving 15999 MiB for main workspace. Using up to 4 compute threads. [New Thread 0x7ffff7fc5640 (LWP 985022)] Thread 1 "plink2-sse3" received signal SIGSEGV, Segmentation fault. plink2::LoadPsam (psamname=psamname@entry=0x7fffffffbe60 "tmp_data.psam", pheno_range_list_ptr=<optimized out>, fam_cols=..., pheno_ct_max=<optimized out>, missing_pheno=<optimized out>, affection_01=0, max_thread_ct=4, piip=0x7fffffff8870, sample_include_ptr=0x7fffffff8790, founder_info_ptr=0x7fffffff87a8, sex_nm_ptr=0x7fffffff8798, sex_male_ptr=0x7fffffff87a0, pheno_cols_ptr=0x7fffffff8770, pheno_names_ptr=0x7fffffff8780, raw_sample_ct_ptr=0x7fffffff8728, pheno_ct_ptr=0x7fffffff8720, max_pheno_name_blen_ptr=0x7fffffff87b0) at ../plink2_psam.cc:611 611 pheno_cols[pheno_idx].nonmiss = nullptr; Please let me know if I can do further checks. Kind regards Andreas. -- http://fam-tille.de