Package: wnpp Severity: wishlist Subject: ITP: r-bioc-megadepth -- megadepth: BigWig and BAM related utilities Package: wnpp Owner: Steffen Moeller <moel...@debian.org> Severity: wishlist
* Package name : r-bioc-megadepth Version : 1.4.0 Upstream Author : Leonardo Collado-Torres, * URL : https://bioconductor.org/packages/megadepth/ * License : Artistic-2.0 Programming Lang: GNU R Description : megadepth: BigWig and BAM related utilities This package provides an R interface to Megadepth by Christopher Wilks available at https://github.com/ChristopherWilks/megadepth. It is particularly useful for computing the coverage of a set of genomic regions across bigWig or BAM files. With this package, you can build base-pair coverage matrices for regions or annotations of your choice from BigWig files. Megadepth was used to create the raw files provided by https://bioconductor.org/packages/recount3. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-bioc-megadepth