Source: gemmi Version: 0.5.6+ds-2 Severity: serious User: debian...@lists.debian.org Usertags: regression
Dear maintainer(s),With a recent upload of gemmi the autopkgtest of gemmi fails in testing when that autopkgtest is run with the binary packages of gemmi from unstable. It passes when run with only packages from testing. In tabular form:
pass fail gemmi from testing 0.5.6+ds-2 all others from testing from testing I copied some of the output at the bottom of this report.Currently this regression is blocking the migration to testing [1]. Can you please investigate the situation and fix it?
More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation Paul [1] https://qa.debian.org/excuses.php?package=gemmi https://ci.debian.net/data/autopkgtest/testing/arm64/g/gemmi/25899714/log.gz=================================== FAILURES =================================== __________________________ TestProg.test_sfcalc_1pfe ___________________________
self = <test_prog.TestProg testMethod=test_sfcalc_1pfe>@unittest.skipIf(sys.platform == 'win32', 'with MSVC it differs slightly')
def test_sfcalc_1pfe(self):
$ gemmi sfcalc --dmin=9 --rate=4 --blur=60 --rcut=1e-7 --test -v tests/1pfe.cif.gzself.do('''\
[...]RMSE=0.0010414 0.0001639% max|dF|=0.003530 R=0.000% <dPhi>=8.067e-06
''') # noqa: E501tests/test_prog.py:89: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ tests/test_prog.py:36: in do
self.assertEqual(expected_lines, output_lines)E AssertionError: Lists differ: ['RMSE=0.0010414 0.0001639% max|dF|=0.003530 R=0.000% <dPhi>=8.067e-06'] != ['RMSE=0.0010127 0.0001594% max|dF|=0.003041 R=0.000% <dPhi>=7.880e-06']
E E First differing element 0:E 'RMSE=0.0010414 0.0001639% max|dF|=0.003530 R=0.000% <dPhi>=8.067e-06' E 'RMSE=0.0010127 0.0001594% max|dF|=0.003041 R=0.000% <dPhi>=7.880e-06' E E - ['RMSE=0.0010414 0.0001639% max|dF|=0.003530 R=0.000% <dPhi>=8.067e-06']
E ? - ^ ^^ -- ^ --E E + ['RMSE=0.0010127 0.0001594% max|dF|=0.003041 R=0.000% <dPhi>=7.880e-06']
E ? ^^ ^ + ++ ++ ^__________________________ TestProg.test_sfcalc_5wkd ___________________________
self = <test_prog.TestProg testMethod=test_sfcalc_5wkd>@unittest.skipIf(sys.platform == 'win32', 'with MSVC it differs slightly')
def test_sfcalc_5wkd(self):
$ gemmi sfcalc --blur=12 --dmin=2.5 --rate=2.5 --rcut=1e-7 --test -v tests/5wkd.pdbself.do('''\
[...]RMSE=3.3342e-05 4.703e-05% max|dF|=0.0001706 R=0.000% <dPhi>=4.718e-06
''') # noqa: E501tests/test_prog.py:81: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ tests/test_prog.py:36: in do
self.assertEqual(expected_lines, output_lines)E AssertionError: Lists differ: ['RMSE=3.3342e-05 4.703e-05% max|dF|=0.0001706 R=0.000% <dPhi>=4.718e-06'] != ['RMSE=3.2830e-05 4.630e-05% max|dF|=0.0001628 R=0.000% <dPhi>=4.665e-06']
E E First differing element 0:E 'RMSE=3.3342e-05 4.703e-05% max|dF|=0.0001706 R=0.000% <dPhi>=4.718e-06' E 'RMSE=3.2830e-05 4.630e-05% max|dF|=0.0001628 R=0.000% <dPhi>=4.665e-06' E E - ['RMSE=3.3342e-05 4.703e-05% max|dF|=0.0001706 R=0.000% <dPhi>=4.718e-06'] E ? ^^^ ^ - -- ^^^ E E + ['RMSE=3.2830e-05 4.630e-05% max|dF|=0.0001628 R=0.000% <dPhi>=4.665e-06'] E ? ++ ^ ^^ ++ ^^^ =========================== short test summary info ============================ FAILED tests/test_prog.py::TestProg::test_sfcalc_1pfe - AssertionError: Lists... FAILED tests/test_prog.py::TestProg::test_sfcalc_5wkd - AssertionError: Lists... ======================== 2 failed, 169 passed in 1.42s =========================
autopkgtest [17:13:32]: test command1
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