Source: fastqtl Version: 2.184+v7+dfsg-2 Severity: serious https://ci.debian.net/data/autopkgtest/testing/amd64/f/fastqtl/27230464/log.gz
... autopkgtest [23:13:45]: test run-sample-analysis: [----------------------- covariates.txt.gz genotypes.vcf.gz genotypes.vcf.gz.tbi interaction.txt phenotypes.bed.gz phenotypes.bed.gz.tbi [33mF[0mast [33mQTL[0m * Authors : Olivier DELANEAU, Halit ONGEN, Alfonso BUIL & Manolis DERMITZAKIS * Contact : olivier.delan...@gmail.com * Webpage : http://fastqtl.sourceforge.net/ * Version : v2.184_gtex Perform permutation based interaction analysis (used to calculate corrected p-values for MPs) * Perform 100 permutations * Test interaction with term from [interaction.txt] * Random number generator is seeded with 1 * Considering variants within 1e+06 bp of the MPs * Using minor allele frequency threshold = 0.0000 * Using minor allele sample threshold = 0 * Using INFO field AF threshold = 0.0000 * Chunk processed 1 / 100 Scanning phenotype data in [phenotypes.bed.gz] * 364 phenotypes Reading phenotype data in [phenotypes.bed.gz] * region = 22:17517460-17646177 * 373 samples included * 4 phenotypes included Reading genotype data in [genotypes.vcf.gz] in VCF format * region = 22:16517460-18646177 * 373 samples included * 8580 sites included Reading covariates in [covariates.txt.gz] * 373 samples included * 4 covariate(s) included Reading interaction term in [interaction.txt] * 373 samples included Imputing missing genotypes Imputing missing phenotypes Initialize covariate Processing gene [ENSG00000237438.1] * Number of variants in cis = 7966 * Beta distribution parameters = 1.0382 2287.7101 * Progress = 25.0% Processing gene [ENSG00000177663.8] * Number of variants in cis = 8165 * Beta distribution parameters = 0.7994 2826.0721 * Progress = 50.0% Processing gene [ENSG00000183307.3] * Number of variants in cis = 8279 * Beta distribution parameters = 0.9595 9906.5566 * Progress = 75.0% Processing gene [ENSG00000069998.8] * Number of variants in cis = 8466 * Beta distribution parameters = 0.9606 4564.2130 * Progress = 100.0% Running time: 37 seconds 5d4 < ENSG00000093072.10 8531 1.06453 1772.43 334.203 snp_22_17738177 -948 0.000356058 0.683168 0.649116 autopkgtest [23:14:22]: test run-sample-analysis: -----------------------] autopkgtest [23:14:22]: test run-sample-analysis: - - - - - - - - - - results - - - - - - - - - - run-sample-analysis FAIL non-zero exit status 1 Likely the files under debian/tests/output_tests/ must be regenerated.