Source: python-pybedtools Version: 0.9.0-2 Severity: serious Tags: sid bookworm User: debian...@lists.debian.org Usertags: needs-update User: debian-pyt...@lists.debian.org Usertags: python3.11 Control: affects -1 src:python3-defaults
Dear maintainer(s),We are in the transition of adding python3.11 as a supported Python version [0]. With a recent upload of python3-defaults the autopkgtest of python-pybedtools fails in testing when that autopkgtest is run with the binary packages of python3-defaults from unstable. It passes when run with only packages from testing. In tabular form:
pass fail python3-defaults from testing 3.10.6-3 python-pybedtools from testing 0.9.0-2 all others from testing from testing I copied some of the output at the bottom of this report.Currently this regression is blocking the migration of python3-defaults to testing [1]. https://docs.python.org/3/whatsnew/3.11.html lists what's new in Python3.11, it may help to identify what needs to be updated.
More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation Paul [0] https://bugs.debian.org/1021984 [1] https://qa.debian.org/excuses.php?package=python3-defaults https://ci.debian.net/data/autopkgtest/testing/amd64/p/python-pybedtools/28750381/log.gz Testing with python3.11: Traceback (most recent call last): File "<string>", line 1, in <module>File "/usr/lib/python3/dist-packages/pybedtools/__init__.py", line 16, in <module>
from . import contribFile "/usr/lib/python3/dist-packages/pybedtools/contrib/__init__.py", line 3, in <module>
from . import venn_makerFile "/usr/lib/python3/dist-packages/pybedtools/contrib/venn_maker.py", line 11, in <module>
from pybedtools import helpersFile "/usr/lib/python3/dist-packages/pybedtools/helpers.py", line 12, in <module>
import pysamFile "/usr/lib/python3/dist-packages/pysam/__init__.py", line 5, in <module>
from pysam.libchtslib import * ModuleNotFoundError: No module named 'pysam.libchtslib' autopkgtest [23:15:21]: test autodep8-python3
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