Source: scipy Version: 1.8.1-14 Severity: serious X-Debbugs-CC: nu...@packages.debian.org Tags: sid bookworm User: debian...@lists.debian.org Usertags: needs-update Control: affects -1 src:numpy
Dear maintainer(s),With a recent upload of numpy the autopkgtest of scipy fails in testing when that autopkgtest is run with the binary packages of numpy from unstable. It passes when run with only packages from testing. In tabular form:
pass fail
numpy from testing 1:1.23.5-2
scipy from testing 1.8.1-14
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration of numpy to testing
[1]. Of course, numpy shouldn't just break your autopkgtest (or even
worse, your package), but it seems to me that the change in numpy was
intended and your package needs to update to the new situation.
If this is a real problem in your package (and not only in your autopkgtest), the right binary package(s) from numpy should really add a versioned Breaks on the unfixed version of (one of your) package(s). Note: the Breaks is nice even if the issue is only in the autopkgtest as it helps the migration software to figure out the right versions to combine in the tests.
More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation Paul [1] https://qa.debian.org/excuses.php?package=numpy https://ci.debian.net/data/autopkgtest/testing/armel/s/scipy/29447608/log.gz skipping tests with SKIP_TEST_LIST= === Testing: python3.10 ================================ test session starts ============================== platform linux -- Python 3.10.9, pytest-7.1.2, pluggy-1.0.0+repack -- /usr/bin/python3.10
cachedir: .pytest_cacherootdir: /tmp/autopkgtest-lxc.81kfm6nh/downtmp/build.dRh/src, configfile: pytest.ini collecting ... collected 49779 items / 1 error / 12514 deselected / 1 skipped / 37265 selected
==================================== ERRORS ==================================== __________ ERROR collecting _build_utils/tests/test_scipy_version.py ___________
/usr/lib/python3.10/importlib/__init__.py:126: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
level = 0
name = 'scipy._build_utils.tests.test_scipy_version'
package = None
<frozen importlib._bootstrap>:1050: in _gcd_import
???
level = 0
name = 'scipy._build_utils.tests.test_scipy_version'
package = None
<frozen importlib._bootstrap>:1027: in _find_and_load
???
import_ = <function _gcd_import at 0xf7538df0>
module = <object object at 0xf7597038>
name = 'scipy._build_utils.tests.test_scipy_version'
<frozen importlib._bootstrap>:992: in _find_and_load_unlocked
???
import_ = <function _gcd_import at 0xf7538df0>
name = 'scipy._build_utils.tests.test_scipy_version'
parent = 'scipy._build_utils.tests'
path = None
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
args = ('scipy._build_utils.tests',)
f = <function _gcd_import at 0xf7538df0>
kwds = {}
<frozen importlib._bootstrap>:1050: in _gcd_import
???
level = 0
name = 'scipy._build_utils.tests'
package = None
<frozen importlib._bootstrap>:1027: in _find_and_load
???
import_ = <function _gcd_import at 0xf7538df0>
module = <object object at 0xf7597038>
name = 'scipy._build_utils.tests'
<frozen importlib._bootstrap>:992: in _find_and_load_unlocked
???
import_ = <function _gcd_import at 0xf7538df0>
name = 'scipy._build_utils.tests'
parent = 'scipy._build_utils'
path = None
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
args = ('scipy._build_utils',)
f = <function _gcd_import at 0xf7538df0>
kwds = {}
<frozen importlib._bootstrap>:1050: in _gcd_import
???
level = 0
name = 'scipy._build_utils'
package = None
<frozen importlib._bootstrap>:1027: in _find_and_load
???
import_ = <function _gcd_import at 0xf7538df0>
module = <object object at 0xf7597038>
name = 'scipy._build_utils'
<frozen importlib._bootstrap>:1006: in _find_and_load_unlocked
???
import_ = <function _gcd_import at 0xf7538df0>
name = 'scipy._build_utils'
parent = 'scipy'
parent_module = <module 'scipy' from
'/usr/lib/python3/dist-packages/scipy/__init__.py'>
path = ['/usr/lib/python3/dist-packages/scipy']
spec = ModuleSpec(name='scipy._build_utils',
loader=<_frozen_importlib_external.SourceFileLoader object at
0xf5035dd8>, origi...ages/scipy/_build_utils/__init__.py',
submodule_search_locations=['/usr/lib/python3/dist-packages/scipy/_build_utils'])
<frozen importlib._bootstrap>:688: in _load_unlocked
???
module = <module 'scipy._build_utils' from
'/usr/lib/python3/dist-packages/scipy/_build_utils/__init__.py'>
spec = ModuleSpec(name='scipy._build_utils',
loader=<_frozen_importlib_external.SourceFileLoader object at
0xf5035dd8>, origi...ages/scipy/_build_utils/__init__.py',
submodule_search_locations=['/usr/lib/python3/dist-packages/scipy/_build_utils'])
<frozen importlib._bootstrap_external>:883: in exec_module
???
code = <code object <module> at 0xf503cab0, file
"/usr/lib/python3/dist-packages/scipy/_build_utils/__init__.py", line 1>
module = <module 'scipy._build_utils' from
'/usr/lib/python3/dist-packages/scipy/_build_utils/__init__.py'>
self = <_frozen_importlib_external.SourceFileLoader
object at 0xf5035dd8>
<frozen importlib._bootstrap>:241: in _call_with_frames_removed
???
args = (<code object <module> at 0xf503cab0, file
"/usr/lib/python3/dist-packages/scipy/_build_utils/__init__.py", line
1>, {..._.cpython-310.pyc', '__doc__': None, '__file__':
'/usr/lib/python3/dist-packages/scipy/_build_utils/__init__.py', ...})
f = <built-in function exec>
kwds = {}
/usr/lib/python3/dist-packages/scipy/_build_utils/__init__.py:4: in <module>
from ._fortran import *
__builtins__ = <builtins>
__cached__ =
'/usr/lib/python3/dist-packages/scipy/_build_utils/__pycache__/__init__.cpython-310.pyc'
__doc__ = None
__file__ =
'/usr/lib/python3/dist-packages/scipy/_build_utils/__init__.py'
__loader__ = <_frozen_importlib_external.SourceFileLoader
object at 0xf5035dd8>
__name__ = 'scipy._build_utils'
__package__ = 'scipy._build_utils'
__path__ = ['/usr/lib/python3/dist-packages/scipy/_build_utils']
__spec__ = ModuleSpec(name='scipy._build_utils',
loader=<_frozen_importlib_external.SourceFileLoader object at
0xf5035dd8>, origi...ages/scipy/_build_utils/__init__.py',
submodule_search_locations=['/usr/lib/python3/dist-packages/scipy/_build_utils'])
np = <module 'numpy' from
'/usr/lib/python3/dist-packages/numpy/__init__.py'>
os = <module 'os' from '/usr/lib/python3.10/os.py'>
/usr/lib/python3/dist-packages/scipy/_build_utils/_fortran.py:8: in <module>
from .system_info import combine_dict
__builtins__ = <builtins>
__cached__ =
'/usr/lib/python3/dist-packages/scipy/_build_utils/__pycache__/_fortran.cpython-310.pyc'
__doc__ = None
__file__ =
'/usr/lib/python3/dist-packages/scipy/_build_utils/_fortran.py'
__loader__ = <_frozen_importlib_external.SourceFileLoader
object at 0xf5035d18>
__name__ = 'scipy._build_utils._fortran'
__package__ = 'scipy._build_utils'
__spec__ = ModuleSpec(name='scipy._build_utils._fortran',
loader=<_frozen_importlib_external.SourceFileLoader object at
0xf5035d18>,
origin='/usr/lib/python3/dist-packages/scipy/_build_utils/_fortran.py')
__warningregistry__ = {'version': 38}
get_platform = <function get_platform at 0xf5050730>
np = <module 'numpy' from
'/usr/lib/python3/dist-packages/numpy/__init__.py'>
os = <module 'os' from '/usr/lib/python3.10/os.py'>
re = <module 're' from '/usr/lib/python3.10/re.py'>
sys = <module 'sys' (built-in)>
/usr/lib/python3/dist-packages/scipy/_build_utils/system_info.py:4: in
<module>
import numpy.distutils.system_info
__builtins__ = <builtins>
__cached__ =
'/usr/lib/python3/dist-packages/scipy/_build_utils/__pycache__/system_info.cpython-310.pyc'
__doc__ = None
__file__ =
'/usr/lib/python3/dist-packages/scipy/_build_utils/system_info.py'
__loader__ = <_frozen_importlib_external.SourceFileLoader
object at 0xf5056d78>
__name__ = 'scipy._build_utils.system_info'
__package__ = 'scipy._build_utils'
__spec__ = ModuleSpec(name='scipy._build_utils.system_info',
loader=<_frozen_importlib_external.SourceFileLoader object at
0xf5056d78>,
origin='/usr/lib/python3/dist-packages/scipy/_build_utils/system_info.py')
__warningregistry__ = {'version': 38}
np = <module 'numpy' from
'/usr/lib/python3/dist-packages/numpy/__init__.py'>
warnings = <module 'warnings' from
'/usr/lib/python3.10/warnings.py'>
/usr/lib/python3/dist-packages/numpy/distutils/__init__.py:31: in <module>
warnings.warn("\n\n"
E DeprecationWarning: E E `numpy.distutils` is deprecated since
NumPy 1.23.0, as a result
E of the deprecation of `distutils` itself. It will be removed for E Python >= 3.12. For older Python versions it will remain present.E It is recommended to use `setuptools < 60.0` for those Python versions.
E For more details, see: E https://numpy.org/devdocs/reference/distutils_status_migration.html FormatError = <class 'numpy.distutils.npy_pkg_config.FormatError'> LibraryInfo = <class 'numpy.distutils.npy_pkg_config.LibraryInfo'> PkgNotFound = <class 'numpy.distutils.npy_pkg_config.PkgNotFound'> VariableSet = <class 'numpy.distutils.npy_pkg_config.VariableSet'> __builtins__ = <builtins>__cached__ = '/usr/lib/python3/dist-packages/numpy/distutils/__pycache__/__init__.cpython-310.pyc' __doc__ = '\nAn enhanced distutils, providing support for Fortran compilers, for BLAS,\nLAPACK and other common libraries for nu...de paths and similar build options, please see\n``site.cfg.example`` in the root of the NumPy repository or sdist.\n\n' __file__ = '/usr/lib/python3/dist-packages/numpy/distutils/__init__.py' __loader__ = <_frozen_importlib_external.SourceFileLoader object at 0xf5056ec8>
__name__ = 'numpy.distutils'
__package__ = 'numpy.distutils'
__path__ = ['/usr/lib/python3/dist-packages/numpy/distutils']
__spec__ = ModuleSpec(name='numpy.distutils',
loader=<_frozen_importlib_external.SourceFileLoader object at
0xf5056ec8>, origin='...t-packages/numpy/distutils/__init__.py',
submodule_search_locations=['/usr/lib/python3/dist-packages/numpy/distutils'])
ccompiler = <module 'numpy.distutils.ccompiler' from
'/usr/lib/python3/dist-packages/numpy/distutils/ccompiler.py'>
exec_command = <module 'numpy.distutils.exec_command' from
'/usr/lib/python3/dist-packages/numpy/distutils/exec_command.py'>
log = <module 'numpy.distutils.log' from
'/usr/lib/python3/dist-packages/numpy/distutils/log.py'>
misc_util = <module 'numpy.distutils.misc_util' from
'/usr/lib/python3/dist-packages/numpy/distutils/misc_util.py'>
npy_pkg_config = <module 'numpy.distutils.npy_pkg_config' from
'/usr/lib/python3/dist-packages/numpy/distutils/npy_pkg_config.py'>
parse_flags = <function parse_flags at 0xf4f21bb0>
read_config = <function read_config at 0xf4f468e0>
unixccompiler = <module 'numpy.distutils.unixccompiler' from
'/usr/lib/python3/dist-packages/numpy/distutils/unixccompiler.py'>
warnings = <module 'warnings' from
'/usr/lib/python3.10/warnings.py'>
=========================== short test summary info
============================
ERROR ../../_build_utils/tests/test_scipy_version.py -
DeprecationWarning: !!!!!!!!!!!!!!!!!!!! Interrupted: 1 error during
collection !!!!!!!!!!!!!!!!!!!!
================ 1 skipped, 12514 deselected, 1 error in 18.91s
================
autopkgtest [08:17:44]: test python3
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