Source: smiles-scripts
Version: 0.2.0+dfsg1-4
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20230726 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> find: ‘externals’: No such file or directory
> find: ‘externals’: No such file or directory
> find: ‘externals’: No such file or directory
> find: ‘externals’: No such file or directory
> find: ‘externals’: No such file or directory
> find: ‘externals’: No such file or directory
> find: ‘externals’: No such file or directory
> find: ‘externals’: No such file or directory
> find: ‘externals’: No such file or directory
> find: ‘externals’: No such file or directory
> find: ‘externals’: No such file or directory
> find: ‘externals’: No such file or directory
> find: ‘externals’: No such file or directory
> find: ‘externals’: No such file or directory
> find: ‘externals’: No such file or directory
> find: ‘externals’: No such file or directory
> find: ‘externals’: No such file or directory
> find: ‘externals’: No such file or directory
> tests/cases/cdkcif2smiles_001.opt:
> tests/cases/cdkcif2xyz_001.opt:
> tests/cases/cdkdepict-cgi_002.sh:
> tests/cases/cdkdepict_002.inp:
> tests/cases/cdkdepict_003.opt:
> tests/cases/cdkdepict_007.inp:
> tests/cases/cdkdepict_021.opt:
> tests/cases/cdkrecharge_001.opt: OK
> tests/cases/cdkrecharge_002.sh: OK
> tests/cases/cdkrecharge_003.opt: OK
> OK
> tests/cases/cdkrecharge_004.opt:
> tests/cases/cdkrecharge_005.opt: OK
> tests/cases/cdkrecharge_006.inp: OK
> tests/cases/cdkrecharge_007.opt: OK
> tests/cases/cdkrecharge_008.inp: OK
> tests/cases/cdkrecharge_009.opt: OK
> tests/cases/cdkrecharge_010.opt: OK
> tests/cases/cdkrecharge_011.opt: OK
> OK
> tests/cases/cdkrecharge_012.inp:
> tests/cases/cdkrecharge_013.inp: OK
> tests/cases/cdkrecharge_014.inp: OK
> tests/cases/cdkrecharge_015.inp: OK
> tests/cases/cdkrecharge_016.sh: OK
> tests/cases/cdkrecharge_017.sh: OK
> tests/cases/cdkrecharge_018.inp: OK
> tests/cases/cdkrecharge_019.inp: OK
> tests/cases/cdkrecharge_020.inp: OK
> tests/cases/cdksdf2smiles_001.opt: OK
> tests/cases/cdksdf2smiles_002.inp: OK
> tests/cases/cdksdf2smiles_003.inp: OK
> tests/cases/cdksdf2smiles_004.inp: OK
> OK
> tests/cases/cdksdf2smiles_006.inp:
> tests/cases/cdksdf2smiles_008.inp: OK
> tests/cases/cml-to-smi_001.inp: OK
> tests/cases/cml-to-smi_002.inp: OK
> tests/cases/cml-to-smi_003.inp: OK
> tests/cases/cml-to-smi_004.inp: OK
> tests/cases/cml-to-smi_005.inp: OK
> tests/cases/cml-to-smi_006.inp: OK
> tests/cases/cml-to-smi_007.inp: FAILED:
> 0a1,2
> > cannot represent cis/trans bond between atoms 12 and 8 as there are no
> > eligible single bonds nearby
> > cannot represent cis/trans bond between atoms 10 and 9 as there are no
> > eligible single bonds nearby
> tests/cases/cml-to-smi_008.inp: OK
> OK
> tests/cases/cml-to-smi_009.inp:
> tests/cases/sdf-to-smi_001.inp: OK
> OK
> tests/cases/sdf-to-smi_003.inp:
> tests/cases/sdf-to-smi_004.inp: OK
> OK
> OK
> tests/cases/sdf-to-smi_005.inp: OK
> OK
> tests/cases/sdf-to-smi_006.inp:
> tests/cases/sdf-to-smi_007.inp: OK
> tests/cases/sdf-to-smi_008.inp: OK
> tests/cases/sdf-to-smi_009.inp:
> tests/cases/sdf-to-smi_010.inp:
> tests/cases/sdf-to-smi_011.inp: OK
> tests/cases/sdf-to-smi_012.inp: OK
> OK
> tests/cases/sdf-to-smi_013.inp: OK
> tests/cases/sdf-to-smi_014.inp: OK
> tests/cases/sdf-to-smi_015.inp: OK
> tests/cases/smi_canonicalise_001.inp:
> tests/cases/smi_canonicalise_002.inp: OK
> tests/cases/smi_canonicalise_003.inp: OK
> tests/cases/smi_canonicalise_004.inp: OK
> tests/cases/smi_canonicalise_005.inp: OK
> tests/cases/smi_canonicalise_006.inp: OK
> tests/cases/smi_canonicalise_007.inp: OK
> tests/cases/smi_canonicalise_008.inp: OK
> tests/cases/smi_canonicalise_009.inp: OK
> tests/cases/smi_canonicalise_010.inp: OK
> tests/cases/smi_canonicalise_011.inp: OK
> tests/cases/smi_canonicalise_012.inp: OK
> tests/cases/smi_canonicalise_013.inp: OK
> OK
> tests/cases/smi_canonicalise_014.inp:
> tests/cases/smi_canonicalise_015.inp: OK
> tests/cases/smi_canonicalise_016.inp: OK
> tests/cases/smi_canonicalise_017.inp: OK
> tests/cases/smi_canonicalise_018.inp: OK
> tests/cases/smi_canonicalise_019.inp: OK
> tests/cases/smi_canonicalise_020.inp: OK
> tests/cases/smi_canonicalise_021.inp: OK
> tests/cases/smi_canonicalise_022.inp: OK
> tests/cases/smi_canonicalise_023.inp: OK
> tests/cases/smi_canonicalise_024.inp: OK
> tests/cases/smi_canonicalise_025.inp: OK
> tests/cases/smi_canonicalise_026.inp: OK
> tests/cases/smi_canonicalise_027.inp: OK
> tests/cases/smi_canonicalise_028.inp: OK
> tests/cases/smi_canonicalise_029.inp: OK
> tests/cases/smi_isomorphism_001.sh: OK
> tests/cases/smi_isomorphism_002.sh: OK
> tests/cases/smi_isomorphism_003.sh: OK
> tests/cases/smi_isomorphism_004.sh: OK
> tests/cases/smi_isomorphism_005.sh: OK
> tests/cases/smi_isomorphism_006.sh: OK
> tests/cases/smi_isomorphism_007.sh: OK
> tests/cases/smi_isomorphism_008.sh: OK
> tests/cases/smi_isomorphism_009.sh: OK
> OK
> tests/cases/smi_isomorphism_010.sh:
> tests/cases/smi_isomorphism_011.sh: OK
> tests/cases/smi_isomorphism_012.sh: OK
> tests/cases/smi_isomorphism_013.sh: OK
> tests/cases/smi_isomorphism_014.sh: OK
> tests/cases/smi_isomorphism_015.sh: OK
> tests/cases/smi_isomorphism_016.sh: OK
> tests/cases/smi_isomorphism_017.sh: OK
> tests/cases/smi_isomorphism_018.sh: OK
> tests/cases/smi_isomorphism_019.sh: OK
> tests/cases/smi_isomorphism_020.sh: OK
> tests/cases/smi_isomorphism_021.sh: OK
> tests/cases/smi_isomorphism_022.sh: FAILED:
> 1,2d0
> < scripts/smi_isomorphism: -(1) XXXXXXX: 2 tetrahedral chiral center(s) with
> less than 4 distinct neighbours were removed.
> < scripts/smi_isomorphism: -(1) XXXXXXX: 2 tetrahedral chiral center(s) with
> less than 4 distinct neighbours were removed.
> tests/cases/smi_isomorphism_023.sh: OK
> tests/cases/smi_isomorphism_024.sh: OK
> tests/cases/smi_isomorphism_025.sh: OK
> tests/cases/smi_isomorphism_026.sh: OK
> tests/cases/smi_isomorphism_027.sh: OK
> tests/cases/smi_isomorphism_028.sh: OK
> tests/cases/smi_isomorphism_029.sh: OK
> tests/cases/smi_isomorphism_030.sh: OK
> tests/cases/smi_isomorphism_031.sh: OK
> tests/cases/smi_isomorphism_032.sh: OK
> tests/cases/smi_isomorphism_033.sh: OK
> tests/cases/smi_isomorphism_034.sh: OK
> tests/cases/smi_parse_001.inp: OK
> tests/cases/smi_parse_002.inp: OK
> OK
> tests/cases/smi_parse_003.sh: OK
> OK
> OK
> OK
> OK
> OK
> OK
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> find tests/outputs -name '*.diff' -a -size +0 | xargs --no-run-if-empty -i
> echo FAILED: {}
> FAILED: tests/outputs/smi_isomorphism_019.diff
> FAILED: tests/outputs/cml-to-smi_003.diff
> find tests/outputs -name '*.diff' -a -size +0 | xargs --no-run-if-empty false
> # Detect test failures
> make[1]: *** [debian/rules:35: override_dh_auto_test] Error 123
The full build log is available from:
http://qa-logs.debian.net/2023/07/26/smiles-scripts_0.2.0+dfsg1-4_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20230726;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20230726&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
