Source: biosig Version: 2.5.0-1 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-sab-20230813 ftbfs-source-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -S > ------------------------------------------------------------------------------------------------------------------- > > dpkg-buildpackage: info: source package biosig > dpkg-buildpackage: info: source version 2.5.0-1 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Andreas Tille <[email protected]> > dpkg-source --before-build . > debian/rules clean > dh clean --with python3,numpy3,octave > debian/rules override_dh_auto_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > if [ -f biosig4c++/python//setup.py ] ; then pybuild --clean ; fi > I: pybuild base:275: python3.11 setup.py clean > /<<PKGBUILDDIR>>/biosig4c++/python/setup.py:35: DeprecationWarning: > > `numpy.distutils` is deprecated since NumPy 1.23.0, as a result > of the deprecation of `distutils` itself. It will be removed for > Python >= 3.12. For older Python versions it will remain present. > It is recommended to use `setuptools < 60.0` for those Python versions. > For more details, see: > https://numpy.org/devdocs/reference/distutils_status_migration.html > > > import numpy.distutils.misc_util > running clean > removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_biosig/build' (and > everything under it) > 'build/bdist.linux-x86_64' does not exist -- can't clean it > 'build/scripts-3.11' does not exist -- can't clean it > dh_auto_clean > make -j8 distclean > make[2]: Entering directory '/<<PKGBUILDDIR>>' > make -C biosig4c++/mma clean > make[3]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++/mma' > ls: cannot access '/SystemFiles/Links/MathLink/DeveloperKit/*': No such file > or directory > mliver.c:5:10: fatal error: mathlink.h: No such file or directory > 5 | #include <mathlink.h> > | ^~~~~~~~~~~~ > compilation terminated. > rm -f *.o* */*.o* > rm -f *tm.c */*tm.c > rm -f *.exe */*.exe > make[3]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++/mma' > make -C biosig4c++ clean > make[3]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++' > rm -f *~ > rm -f *.a > rm -f *.def > rm -f *.dll > rm -f *.dll.a > rm -f *.i > rm -f *.o > rm -f *.so *.dylib > rm -f *.so.* > rm -f *.oct > rm -f libbiosig.pc > rm -f test/t1.* > rm -f win32/*.exe win32/*.o* win32/*.lib win32/*.a > rm -f win64/*.exe win64/*.o* win64/*.lib win64/*.a > rm -f t240/*.o* > rm -f t240/libcnsfef.a > rm -f libbiosig.* libbiosig3.* > rm -f pdp2gdf save2gdf physicalunits biosig_fhir biosig2gdf > rm -f mma/biosig.exe mma/*/biosig.exe > make -C java clean > make[4]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++/java' > rm *.h > rm: cannot remove '*.h': No such file or directory > make[4]: [Makefile:33: clean] Error 1 (ignored) > rm *.o > rm: cannot remove '*.o': No such file or directory > make[4]: [Makefile:34: clean] Error 1 (ignored) > rm *.cxx > rm: cannot remove '*.cxx': No such file or directory > make[4]: [Makefile:35: clean] Error 1 (ignored) > rm *.so > rm: cannot remove '*.so': No such file or directory > make[4]: [Makefile:36: clean] Error 1 (ignored) > make[4]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++/java' > make -C mex clean > make[4]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++/mex' > rm -f *.o *.obj *.o64 core octave-core *.oct *.mex* mexSOPEN.cpp > make[4]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++/mex' > rm -f mex/mexbiosig*.src.tar.gz > rm -f mex/biosig4octave*.src.tar.gz > make -C mma clean > make[4]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++/mma' > ls: cannot access '/SystemFiles/Links/MathLink/DeveloperKit/*': No such file > or directory > mliver.c:5:10: fatal error: mathlink.h: No such file or directory > 5 | #include <mathlink.h> > | ^~~~~~~~~~~~ > compilation terminated. > rm -f *.o* */*.o* > rm -f *tm.c */*tm.c > rm -f *.exe */*.exe > make[4]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++/mma' > make -C php clean > make[4]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++/php' > rm *.h > rm: cannot remove '*.h': No such file or directory > make[4]: [Makefile:19: clean] Error 1 (ignored) > rm *.o > rm: cannot remove '*.o': No such file or directory > make[4]: [Makefile:20: clean] Error 1 (ignored) > rm *.cpp > rm: cannot remove '*.cpp': No such file or directory > make[4]: [Makefile:21: clean] Error 1 (ignored) > rm *.so > rm: cannot remove '*.so': No such file or directory > make[4]: [Makefile:22: clean] Error 1 (ignored) > make[4]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++/php' > make -C perl clean > make[4]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++/perl' > rm *.cxx > rm: cannot remove '*.cxx': No such file or directory > make[4]: [Makefile:21: clean] Error 1 (ignored) > rm *.o > rm: cannot remove '*.o': No such file or directory > make[4]: [Makefile:22: clean] Error 1 (ignored) > rm *.pm > rm: cannot remove '*.pm': No such file or directory > make[4]: [Makefile:23: clean] Error 1 (ignored) > rm *.so > rm: cannot remove '*.so': No such file or directory > make[4]: [Makefile:24: clean] Error 1 (ignored) > make[4]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++/perl' > make -C R clean > make[4]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++/R' > rm *.o *.so *.gz biosig_2.5.0.tar.gz > rm: cannot remove '*.o': No such file or directory > rm: cannot remove '*.so': No such file or directory > rm: cannot remove '*.gz': No such file or directory > rm: cannot remove 'biosig_2.5.0.tar.gz': No such file or directory > make[4]: *** [Makefile:10: clean] Error 1 > make[4]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++/R' > make[3]: [Makefile:977: clean] Error 2 (ignored) > make -C ruby clean > make[4]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++/ruby' > rm *.cxx > rm: cannot remove '*.cxx': No such file or directory > make[4]: [Makefile:20: clean] Error 1 (ignored) > rm *.o > rm: cannot remove '*.o': No such file or directory > make[4]: [Makefile:21: clean] Error 1 (ignored) > rm *.pm > rm: cannot remove '*.pm': No such file or directory > make[4]: [Makefile:22: clean] Error 1 (ignored) > rm *.so > rm: cannot remove '*.so': No such file or directory > make[4]: [Makefile:23: clean] Error 1 (ignored) > make[4]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++/ruby' > make -C tcl clean > make[4]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++/tcl' > rm *.cxx > rm: cannot remove '*.cxx': No such file or directory > make[4]: [Makefile:19: clean] Error 1 (ignored) > rm *.o > rm: cannot remove '*.o': No such file or directory > make[4]: [Makefile:20: clean] Error 1 (ignored) > rm *.so > rm: cannot remove '*.so': No such file or directory > make[4]: [Makefile:21: clean] Error 1 (ignored) > make[4]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++/tcl' > make[3]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++' > rm mexbiosig*.src.tar.gz > rm: cannot remove 'mexbiosig*.src.tar.gz': No such file or directory > make[2]: [Makefile:44: clean] Error 1 (ignored) > rm biosig4octave*.src.tar.gz > make -C biosig4c++/python clean > make[3]: Entering directory '/<<PKGBUILDDIR>>/biosig4c++/python' > rm -rf build/* > rm -rf dist/* > rm *.so > rm: cannot remove '*.so': No such file or directory > make[3]: [Makefile:32: clean] Error 1 (ignored) > make[3]: Leaving directory '/<<PKGBUILDDIR>>/biosig4c++/python' > rm config.log > rm config.status > rm Makefile biosig4c++/Makefile biosig4c++/*/Makefile \ > biosig4c++/python/setup.py \ > biosig4c++/R/DESCRIPTION > make[2]: Leaving directory '/<<PKGBUILDDIR>>' > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_autoreconf_clean > dh_clean > dpkg-source -b . > dpkg-source: info: using source format '3.0 (quilt)' > dpkg-source: info: building biosig using existing ./biosig_2.5.0.orig.tar.xz > dpkg-source: warning: ignoring deletion of file config.log, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file install-sh, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file Makefile, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file configure, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file config.h.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file config.status, use > --include-removal to override > dpkg-source: warning: ignoring deletion of directory autom4te.cache > dpkg-source: warning: ignoring deletion of file autom4te.cache/requests, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file autom4te.cache/output.1, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file autom4te.cache/traces.1, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file autom4te.cache/output.0, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file autom4te.cache/traces.0, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file biosig4c++/units.i, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file biosig4c++/Makefile, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file > biosig4c++/11073-10102-AnnexB.i, use --include-removal to override > dpkg-source: warning: ignoring deletion of file biosig4c++/eventcodes.i, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file biosig4c++/eventcodegroups.i, > use --include-removal to override > dpkg-source: warning: ignoring deletion of file biosig4c++/t240/Makefile, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file biosig4c++/magic/Makefile, > use --include-removal to override > dpkg-source: warning: ignoring deletion of file biosig4c++/tcl/Makefile, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file biosig4c++/igor/Makefile, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file biosig4c++/examples/Makefile, > use --include-removal to override > dpkg-source: warning: ignoring deletion of file biosig4c++/php/Makefile, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file biosig4c++/mma/Makefile, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file biosig4c++/perl/Makefile, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file biosig4c++/mex/Makefile, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file biosig4c++/t241/Makefile, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file biosig4c++/R/DESCRIPTION, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file biosig4c++/R/Makefile, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file biosig4c++/java/Makefile, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file biosig4c++/ruby/Makefile, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file biosig4c++/python/Makefile, > use --include-removal to override > dpkg-source: warning: ignoring deletion of file biosig4c++/python/setup.py, > use --include-removal to override > dpkg-source: info: local changes detected, the modified files are: > biosig-2.5.0/config.h > dpkg-source: error: aborting due to unexpected upstream changes, see > /tmp/biosig_2.5.0-1.diff.TU0m6g > dpkg-source: info: Hint: make sure the version in debian/changelog matches > the unpacked source tree > dpkg-source: info: you can integrate the local changes with dpkg-source > --commit > dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -S' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/13/biosig_2.5.0-1_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
