Source: bowtie Version: 1.3.1-1 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-sab-20230813 ftbfs-source-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -S > ------------------------------------------------------------------------------------------------------------------- > > dpkg-buildpackage: info: source package bowtie > dpkg-buildpackage: info: source version 1.3.1-1 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Andreas Tille <[email protected]> > dpkg-source --before-build . > debian/rules clean > dh clean > debian/rules override_dh_auto_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > rm -f .bowtie* > dh_auto_clean > make -j8 clean > make[2]: Entering directory '/<<PKGBUILDDIR>>' > rm -f bowtie-build-s bowtie-build-l bowtie-align-s bowtie-align-l > bowtie-inspect-s bowtie-inspect-l bowtie-build-s-debug bowtie-build-l-debug > bowtie-align-s-debug bowtie-align-l-debug bowtie-inspect-s-debug > bowtie-inspect-l-debug \ > bowtie_prof \ > bowtie-build-s.exe bowtie-build-l.exe bowtie-align-s.exe bowtie-align-l.exe > bowtie-inspect-s.exe bowtie-inspect-l.exe bowtie-build-s-debug.exe > bowtie-build-l-debug.exe bowtie-align-s-debug.exe bowtie-align-l-debug.exe > bowtie-inspect-s-debug.exe bowtie-inspect-l-debug.exe bowtie_prof.exe \ > bowtie-src.zip bowtie-bin.zip > rm -f *.core > rm -f bowtie-align-s-master* bowtie-align-s-no-io* > rm -rf .lib .include > make[2]: Leaving directory '/<<PKGBUILDDIR>>' > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_clean > dpkg-source -b . > dpkg-source: info: using source format '3.0 (quilt)' > dpkg-source: info: building bowtie using existing ./bowtie_1.3.1.orig.tar.gz > dpkg-source: info: using patch list from debian/patches/series > dpkg-source: warning: newly created empty file '.simple_tests.2.fq' will not > be represented in diff > dpkg-source: warning: file bowtie-1.3.1/.simple_tests.fq has no final newline > (either original or modified version) > dpkg-source: error: cannot represent change to .simple_tests.tmp.1.ebwt: > binary file contents changed > dpkg-source: error: add .simple_tests.tmp.1.ebwt in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to .simple_tests.tmp.1.ebwtl: > binary file contents changed > dpkg-source: error: add .simple_tests.tmp.1.ebwtl in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to .simple_tests.tmp.2.ebwt: > binary file contents changed > dpkg-source: error: add .simple_tests.tmp.2.ebwt in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to .simple_tests.tmp.2.ebwtl: > binary file contents changed > dpkg-source: error: add .simple_tests.tmp.2.ebwtl in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to .simple_tests.tmp.3.ebwt: > binary file contents changed > dpkg-source: error: add .simple_tests.tmp.3.ebwt in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to .simple_tests.tmp.3.ebwtl: > binary file contents changed > dpkg-source: error: add .simple_tests.tmp.3.ebwtl in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: file bowtie-1.3.1/.simple_tests.tmp.4.ebwt has no final > newline (either original or modified version) > dpkg-source: warning: file bowtie-1.3.1/.simple_tests.tmp.4.ebwtl has no > final newline (either original or modified version) > dpkg-source: error: cannot represent change to .simple_tests.tmp.rev.1.ebwt: > binary file contents changed > dpkg-source: error: add .simple_tests.tmp.rev.1.ebwt in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to .simple_tests.tmp.rev.1.ebwtl: > binary file contents changed > dpkg-source: error: add .simple_tests.tmp.rev.1.ebwtl in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to .simple_tests.tmp.rev.2.ebwt: > binary file contents changed > dpkg-source: error: add .simple_tests.tmp.rev.2.ebwt in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to .simple_tests.tmp.rev.2.ebwtl: > binary file contents changed > dpkg-source: error: add .simple_tests.tmp.rev.2.ebwtl in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > __pycache__/bowtie-buildcpython-311.pyc: binary file contents changed > dpkg-source: error: add __pycache__/bowtie-buildcpython-311.pyc in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: unrepresentable changes to source > dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -S' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/13/bowtie_1.3.1-1_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
