Source: gubbins Version: 3.3.0-2 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-sab-20230813 ftbfs-source-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -S > --------------------------------------------------------------------------------------------------------------------- > > dpkg-buildpackage: info: source package gubbins > dpkg-buildpackage: info: source version 3.3.0-2 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Andreas Tille <[email protected]> > dpkg-source --before-build . > debian/rules clean > dh clean --with python3 > dh_auto_clean > make -j8 distclean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > Making distclean in src > make[2]: Entering directory '/<<PKGBUILDDIR>>/src' > test -z "libgubbins.la" || rm -f libgubbins.la > rm -rf .libs _libs > rm -f *.o > test -z "run_all_tests.log" || rm -f run_all_tests.log > rm -f run_all_tests > rm -f gubbins > rm -f *.lo > rm -f ../tests/*.o > rm -f *.tab.c > test -z "run_all_tests.trs" || rm -f run_all_tests.trs > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > test -z "test-suite.log" || rm -f test-suite.log > rm -f ../tests/.deps/.dirstamp > rm -f ./so_locations > rm -f ../tests/.dirstamp > rm -f ../tests/.deps/run_all_tests-check_branch_sequences.Po > rm -f ../tests/.deps/run_all_tests-check_gubbins.Po > rm -f ../tests/.deps/run_all_tests-check_parse_phylip.Po > rm -f ../tests/.deps/run_all_tests-check_snp_searching.Po > rm -f ../tests/.deps/run_all_tests-check_snp_sites.Po > rm -f ../tests/.deps/run_all_tests-check_vcf_parsing.Po > rm -f ../tests/.deps/run_all_tests-helper_methods.Po > rm -f ../tests/.deps/run_all_tests-run_all_tests.Po > rm -f ./.deps/Newickform.Plo > rm -f ./.deps/alignment_file.Plo > rm -f ./.deps/block_tab_file.Plo > rm -f ./.deps/branch_sequences.Plo > rm -f ./.deps/csv_of_snp_sites.Plo > rm -f ./.deps/fasta_of_snp_sites.Plo > rm -f ./.deps/gff_file.Plo > rm -f ./.deps/gubbins.Plo > rm -f ./.deps/main.Po > rm -f ./.deps/parse_phylip.Plo > rm -f ./.deps/parse_vcf.Plo > rm -f ./.deps/phylip_of_snp_sites.Plo > rm -f ./.deps/seqUtil.Plo > rm -f ./.deps/snp_searching.Plo > rm -f ./.deps/snp_sites.Plo > rm -f ./.deps/string_cat.Plo > rm -f ./.deps/tree_scaling.Plo > rm -f ./.deps/tree_statistics.Plo > rm -f ./.deps/vcf.Plo > rm -f Makefile > make[2]: Leaving directory '/<<PKGBUILDDIR>>/src' > Making distclean in release > make[2]: Entering directory '/<<PKGBUILDDIR>>/release' > rm -rf .libs _libs > rm -f *.lo > test -z "" || rm -f > test . = "." || test -z "" || rm -f > rm -f Makefile > make[2]: Leaving directory '/<<PKGBUILDDIR>>/release' > make[2]: Entering directory '/<<PKGBUILDDIR>>' > rm -rf .libs _libs > rm -f *.lo > test -z "" || rm -f > rm -f config.h stamp-h1 > rm -f libtool config.lt > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > rm -f cscope.out cscope.in.out cscope.po.out cscope.files > make[2]: Leaving directory '/<<PKGBUILDDIR>>' > rm -f config.status config.cache config.log configure.lineno > config.status.lineno > rm -f Makefile > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_autoreconf_clean > debian/rules override_dh_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > dh_clean > rm -rf python/*.egg-info python/build python/Makefile > find . -name "*.pyc" -delete > rm -rf python/output_alignment python/tmp* > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dpkg-source -b . > dpkg-source: info: using source format '3.0 (quilt)' > dpkg-source: info: building gubbins using existing ./gubbins_3.3.0.orig.tar.gz > dpkg-source: info: using patch list from debian/patches/series > dpkg-source: warning: ignoring deletion of file > tests/data/multiple_recombinations.tre, use --include-removal to override > dpkg-source: error: cannot represent change to > tests/run_all_tests-check_branch_sequences.gcda: binary file contents changed > dpkg-source: error: add tests/run_all_tests-check_branch_sequences.gcda in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/run_all_tests-check_branch_sequences.gcno: binary file contents changed > dpkg-source: error: add tests/run_all_tests-check_branch_sequences.gcno in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/run_all_tests-check_gubbins.gcda: binary file contents changed > dpkg-source: error: add tests/run_all_tests-check_gubbins.gcda in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/run_all_tests-check_gubbins.gcno: binary file contents changed > dpkg-source: error: add tests/run_all_tests-check_gubbins.gcno in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/run_all_tests-check_parse_phylip.gcda: binary file contents changed > dpkg-source: error: add tests/run_all_tests-check_parse_phylip.gcda in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/run_all_tests-check_parse_phylip.gcno: binary file contents changed > dpkg-source: error: add tests/run_all_tests-check_parse_phylip.gcno in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/run_all_tests-check_snp_searching.gcda: binary file contents changed > dpkg-source: error: add tests/run_all_tests-check_snp_searching.gcda in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/run_all_tests-check_snp_searching.gcno: binary file contents changed > dpkg-source: error: add tests/run_all_tests-check_snp_searching.gcno in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/run_all_tests-check_snp_sites.gcda: binary file contents changed > dpkg-source: error: add tests/run_all_tests-check_snp_sites.gcda in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/run_all_tests-check_snp_sites.gcno: binary file contents changed > dpkg-source: error: add tests/run_all_tests-check_snp_sites.gcno in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/run_all_tests-check_vcf_parsing.gcda: binary file contents changed > dpkg-source: error: add tests/run_all_tests-check_vcf_parsing.gcda in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/run_all_tests-check_vcf_parsing.gcno: binary file contents changed > dpkg-source: error: add tests/run_all_tests-check_vcf_parsing.gcno in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/run_all_tests-helper_methods.gcda: binary file contents changed > dpkg-source: error: add tests/run_all_tests-helper_methods.gcda in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/run_all_tests-helper_methods.gcno: binary file contents changed > dpkg-source: error: add tests/run_all_tests-helper_methods.gcno in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/run_all_tests-run_all_tests.gcda: binary file contents changed > dpkg-source: error: add tests/run_all_tests-run_all_tests.gcda in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/run_all_tests-run_all_tests.gcno: binary file contents changed > dpkg-source: error: add tests/run_all_tests-run_all_tests.gcno in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: unrepresentable changes to source > dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -S' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/13/gubbins_3.3.0-2_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
