Source: fastml Version: 3.11-3 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-sab-20230813 ftbfs-source-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -S > ------------------------------------------------------------------------------------------------------------------ > > dpkg-buildpackage: info: source package fastml > dpkg-buildpackage: info: source version 3.11-3 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Andreas Tille <[email protected]> > dpkg-source --before-build . > debian/rules clean > dh clean > debian/rules override_dh_auto_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > dh_auto_clean > make -j8 clean > make[2]: Entering directory '/<<PKGBUILDDIR>>' > cd libs;make clean > cd programs;make clean > make[3]: Entering directory '/<<PKGBUILDDIR>>/libs' > make[3]: Entering directory '/<<PKGBUILDDIR>>/programs' > cd fastml && make clean > cd phylogeny && make clean > cd gainLoss && make clean > cd indelCoder && make clean > make[4]: Entering directory '/<<PKGBUILDDIR>>/programs/fastml' > rm -f libfastml.a libfastmlDebug.a libfastmlDoubleRep.a fastml fastml.debug > fastml.doubleRep *.o > make[4]: Entering directory '/<<PKGBUILDDIR>>/programs/gainLoss' > rm -f libgainLoss.a libgainLossDebug.a libgainLossDoubleRep.a gainLoss > gainLoss.debug gainLoss.doubleRep *.o > make[4]: Entering directory '/<<PKGBUILDDIR>>/libs/phylogeny' > rm -f libEvolTree.a libEvolTreeDebug.a libEvolTreeDoubleRep.a *.o > make[4]: Entering directory '/<<PKGBUILDDIR>>/programs/indelCoder' > rm -f libindelCoder.a libindelCoderDebug.a libindelCoderDoubleRep.a > indelCoder indelCoder.debug indelCoder.doubleRep *.o > make[4]: Leaving directory '/<<PKGBUILDDIR>>/programs/indelCoder' > make[4]: Leaving directory '/<<PKGBUILDDIR>>/programs/fastml' > make[4]: Leaving directory '/<<PKGBUILDDIR>>/programs/gainLoss' > make[3]: Leaving directory '/<<PKGBUILDDIR>>/programs' > make[4]: Leaving directory '/<<PKGBUILDDIR>>/libs/phylogeny' > make[3]: Leaving directory '/<<PKGBUILDDIR>>/libs' > make[2]: Leaving directory '/<<PKGBUILDDIR>>' > rm -f libs/phylogeny/make.dep \ > programs/fastml/make.dep \ > programs/gainLoss/make.dep \ > programs/indelCoder/make.dep > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_clean > dpkg-source -b . > dpkg-source: info: using source format '3.0 (quilt)' > dpkg-source: info: building fastml using existing ./fastml_3.11.orig.tar.gz > dpkg-source: info: using patch list from debian/patches/series > dpkg-source: warning: ignoring deletion of file programs/gainLoss/make.dep, > use --include-removal to override > dpkg-source: warning: ignoring deletion of file programs/indelCoder/make.dep, > use --include-removal to override > dpkg-source: warning: ignoring deletion of file programs/fastml/make.dep, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file libs/phylogeny/#Makefile#, > use --include-removal to override > dpkg-source: warning: ignoring deletion of file libs/phylogeny/make.dep, use > --include-removal to override > dpkg-source: error: cannot represent change to bin/fastml: binary file > contents changed > dpkg-source: error: add bin/fastml in debian/source/include-binaries if you > want to store the modified binary in the debian tarball > dpkg-source: warning: executable mode 0755 of 'bin/fastml' will not be > represented in diff > dpkg-source: error: cannot represent change to bin/gainLoss: binary file > contents changed > dpkg-source: error: add bin/gainLoss in debian/source/include-binaries if you > want to store the modified binary in the debian tarball > dpkg-source: warning: executable mode 0755 of 'bin/gainLoss' will not be > represented in diff > dpkg-source: error: cannot represent change to bin/indelCoder: binary file > contents changed > dpkg-source: error: add bin/indelCoder in debian/source/include-binaries if > you want to store the modified binary in the debian tarball > dpkg-source: warning: executable mode 0755 of 'bin/indelCoder' will not be > represented in diff > dpkg-source: error: cannot represent change to > libs/phylogeny/tests/checkTreeLikelihoodGivenBranches: binary file contents > changed > dpkg-source: error: add libs/phylogeny/tests/checkTreeLikelihoodGivenBranches > in debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: executable mode 0755 of > 'libs/phylogeny/tests/checkTreeLikelihoodGivenBranches' will not be > represented in diff > dpkg-source: error: cannot represent change to > libs/phylogeny/tests/doubleRep: binary file contents changed > dpkg-source: error: add libs/phylogeny/tests/doubleRep in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: executable mode 0755 of > 'libs/phylogeny/tests/doubleRep' will not be represented in diff > dpkg-source: error: cannot represent change to > libs/phylogeny/tests/given2seqEstimateTheDistBetweenThem: binary file > contents changed > dpkg-source: error: add > libs/phylogeny/tests/given2seqEstimateTheDistBetweenThem in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: executable mode 0755 of > 'libs/phylogeny/tests/given2seqEstimateTheDistBetweenThem' will not be > represented in diff > dpkg-source: error: cannot represent change to > libs/phylogeny/tests/given2seqEstimateTheDistBetweenThemGamma: binary file > contents changed > dpkg-source: error: add > libs/phylogeny/tests/given2seqEstimateTheDistBetweenThemGamma in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: executable mode 0755 of > 'libs/phylogeny/tests/given2seqEstimateTheDistBetweenThemGamma' will not be > represented in diff > dpkg-source: error: cannot represent change to > libs/phylogeny/tests/given2seqEstimateTheDistanceK2P: binary file contents > changed > dpkg-source: error: add libs/phylogeny/tests/given2seqEstimateTheDistanceK2P > in debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: executable mode 0755 of > 'libs/phylogeny/tests/given2seqEstimateTheDistanceK2P' will not be > represented in diff > dpkg-source: error: cannot represent change to > libs/phylogeny/tests/given2seqTheDistBetweenThem-3: binary file contents > changed > dpkg-source: error: add libs/phylogeny/tests/given2seqTheDistBetweenThem-3 in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: executable mode 0755 of > 'libs/phylogeny/tests/given2seqTheDistBetweenThem-3' will not be represented > in diff > dpkg-source: error: cannot represent change to > libs/phylogeny/tests/readTreeWithComments: binary file contents changed > dpkg-source: error: add libs/phylogeny/tests/readTreeWithComments in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: executable mode 0755 of > 'libs/phylogeny/tests/readTreeWithComments' will not be represented in diff > dpkg-source: error: cannot represent change to > libs/phylogeny/tests/splitMap_test: binary file contents changed > dpkg-source: error: add libs/phylogeny/tests/splitMap_test in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: executable mode 0755 of > 'libs/phylogeny/tests/splitMap_test' will not be represented in diff > dpkg-source: error: cannot represent change to > libs/phylogeny/tests/split_test: binary file contents changed > dpkg-source: error: add libs/phylogeny/tests/split_test in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: executable mode 0755 of > 'libs/phylogeny/tests/split_test' will not be represented in diff > dpkg-source: error: unrepresentable changes to source > dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -S' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/13/fastml_3.11-3_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
