Source: mrbayes Version: 3.2.7a-6 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-sab-20230813 ftbfs-source-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -S > ---------------------------------------------------------------------------------------------------------------------- > > dpkg-buildpackage: info: source package mrbayes > dpkg-buildpackage: info: source version 3.2.7a-6 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Andreas Tille <[email protected]> > dpkg-source --before-build . > debian/rules clean > dh clean > dh_auto_clean > make -j8 distclean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > Making distclean in src > make[2]: Entering directory '/<<PKGBUILDDIR>>/src' > test -z "mb" || rm -f mb > rm -f *.o > rm -f *.tab.c > test -z "" || rm -f > rm -f config.h stamp-h1 > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > rm -f ./.deps/mb-bayes.Po > rm -f ./.deps/mb-best.Po > rm -f ./.deps/mb-command.Po > rm -f ./.deps/mb-likelihood.Po > rm -f ./.deps/mb-mbbeagle.Po > rm -f ./.deps/mb-mcmc.Po > rm -f ./.deps/mb-model.Po > rm -f ./.deps/mb-proposal.Po > rm -f ./.deps/mb-sumpt.Po > rm -f ./.deps/mb-utils.Po > rm -f Makefile > make[2]: Leaving directory '/<<PKGBUILDDIR>>/src' > Making distclean in doc > make[2]: Entering directory '/<<PKGBUILDDIR>>/doc' > Making distclean in manual > make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/manual' > test -z "Manual_MrBayes_v3.2.aux Manual_MrBayes_v3.2.bbl > Manual_MrBayes_v3.2.blg Manual_MrBayes_v3.2.log Manual_MrBayes_v3.2.toc" || > rm -f Manual_MrBayes_v3.2.aux Manual_MrBayes_v3.2.bbl Manual_MrBayes_v3.2.blg > Manual_MrBayes_v3.2.log Manual_MrBayes_v3.2.toc > test -z "" || rm -f > test . = "." || test -z "" || rm -f > test -z "Manual_MrBayes_v3.2.pdf" || rm -f Manual_MrBayes_v3.2.pdf > rm -f Makefile > make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/manual' > Making distclean in tutorial > make[3]: Entering directory '/<<PKGBUILDDIR>>/doc/tutorial' > test -z "MBDating.aux MBDating.bbl MBDating.blg MBDating.log MBDating.out" || > rm -f MBDating.aux MBDating.bbl MBDating.blg MBDating.log MBDating.out > test -z "" || rm -f > test . = "." || test -z "" || rm -f > test -z "MBDating.pdf" || rm -f MBDating.pdf > rm -f Makefile > make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc/tutorial' > make[3]: Entering directory '/<<PKGBUILDDIR>>/doc' > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > make[3]: Leaving directory '/<<PKGBUILDDIR>>/doc' > rm -f Makefile > make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc' > Making distclean in examples > make[2]: Entering directory '/<<PKGBUILDDIR>>/examples' > test -z "" || rm -f > test . = "." || test -z "" || rm -f > rm -f Makefile > make[2]: Leaving directory '/<<PKGBUILDDIR>>/examples' > make[2]: Entering directory '/<<PKGBUILDDIR>>' > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > rm -f cscope.out cscope.in.out cscope.po.out cscope.files > make[2]: Leaving directory '/<<PKGBUILDDIR>>' > rm -f config.status config.cache config.log configure.lineno > config.status.lineno > rm -f Makefile > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_autoreconf_clean > dh_clean > dpkg-source -b . > dpkg-source: info: using source format '3.0 (quilt)' > dpkg-source: info: building mrbayes using existing > ./mrbayes_3.2.7a.orig.tar.gz > dpkg-source: info: using patch list from debian/patches/series > dpkg-source: warning: ignoring deletion of file aclocal.m4, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file Makefile.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file configure, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file am-aux/install-sh, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file am-aux/compile, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file am-aux/depcomp, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file am-aux/missing, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file examples/Makefile.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file src/Makefile.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file src/config.h.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file doc/Makefile.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file doc/tutorial/Makefile.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file doc/tutorial/MBDating.pdf, > use --include-removal to override > dpkg-source: warning: ignoring deletion of file > doc/manual/Manual_MrBayes_v3.2.pdf, use --include-removal to override > dpkg-source: warning: ignoring deletion of file doc/manual/Makefile.in, use > --include-removal to override > dpkg-source: error: cannot represent change to mb: binary file contents > changed > dpkg-source: error: add mb in debian/source/include-binaries if you want to > store the modified binary in the debian tarball > dpkg-source: warning: executable mode 0755 of 'mb' will not be represented in > diff > dpkg-source: error: cannot represent change to mb-mpi: binary file contents > changed > dpkg-source: error: add mb-mpi in debian/source/include-binaries if you want > to store the modified binary in the debian tarball > dpkg-source: warning: executable mode 0755 of 'mb-mpi' will not be > represented in diff > dpkg-source: error: unrepresentable changes to source > dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -S' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/13/mrbayes_3.2.7a-6_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
