Source: jellyfish1 Version: 1.1.11-8 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-sab-20230813 ftbfs-source-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -S > ---------------------------------------------------------------------------------------------------------------------------- > > dpkg-buildpackage: info: source package jellyfish1 > dpkg-buildpackage: info: source version 1.1.11-8 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Andreas Tille <[email protected]> > dpkg-source --before-build . > debian/rules clean > dh clean > dh_auto_clean > make -j8 distclean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > test -z "libgtest.a libgtest_main.a" || rm -f libgtest.a libgtest_main.a > test -z "libjellyfish-1.1.la" || rm -f libjellyfish-1.1.la > rm -rf .libs _libs > rm -f bin/jellyfish > cd tests; rm -f seq10m* seq1m* *_0 *_1 *_2 *_S *.md5sum *.histo *.stats > *.timing *.query *.dump *.fa > rm -f *.o > test -z "tests/generate_sequence.log tests/serial_hashing.log > tests/parallel_hashing.log tests/serial_direct_indexing.log > tests/parallel_direct_indexing.log tests/raw_hash.log > tests/generate_fastq_sequence.log tests/parallel_fastq_hashing.log > tests/multi_file.log tests/multi_file_fastq.log tests/from_stream.log > tests/parallel_fastq_sequence_hashing.log tests/from_stream_fastq.log > tests/merge.log tests/min_qual.log tests/big.log tests/parsers.log > tests/small.log tests/parallel_fastq_direct_indexing.log > unit_tests/unit_tests.log" || rm -f tests/generate_sequence.log > tests/serial_hashing.log tests/parallel_hashing.log > tests/serial_direct_indexing.log tests/parallel_direct_indexing.log > tests/raw_hash.log tests/generate_fastq_sequence.log > tests/parallel_fastq_hashing.log tests/multi_file.log > tests/multi_file_fastq.log > tests/from_stream.log tests/parallel_fastq_sequence_hashing.log > tests/from_stream_fastq.log tests/merge.log tests/min_qual.log tests/big.log > tests/parsers.log tests/small.log tests/parallel_fastq_direct_indexing.log > unit_tests/unit_tests.log > rm -f bin/generate_sequence bin/test_double_fifo_input bin/test_read_parser > bin/test_all > rm -f *.lo > rm -rf bin/.libs bin/_libs > rm -f jellyfish/*.o > rm -f *.tab.c > test -z "tests/generate_sequence.trs tests/serial_hashing.trs > tests/parallel_hashing.trs tests/serial_direct_indexing.trs > tests/parallel_direct_indexing.trs tests/raw_hash.trs > tests/generate_fastq_sequence.trs tests/parallel_fastq_hashing.trs > tests/multi_file.trs tests/multi_file_fastq.trs tests/from_stream.trs > tests/parallel_fastq_sequence_hashing.trs tests/from_stream_fastq.trs > tests/merge.trs tests/min_qual.trs tests/big.trs tests/parsers.trs > tests/small.trs tests/parallel_fastq_direct_indexing.trs > unit_tests/unit_tests.trs" || rm -f tests/generate_sequence.trs > tests/serial_hashing.trs tests/parallel_hashing.trs > tests/serial_direct_indexing.trs tests/parallel_direct_indexing.trs > tests/raw_hash.trs tests/generate_fastq_sequence.trs > tests/parallel_fastq_hashing.trs tests/multi_file.trs > tests/multi_file_fastq.trs > tests/from_stream.trs tests/parallel_fastq_sequence_hashing.trs > tests/from_stream_fastq.trs tests/merge.trs tests/min_qual.trs tests/big.trs > tests/parsers.trs tests/small.trs tests/parallel_fastq_direct_indexing.trs > unit_tests/unit_tests.trs > rm -f ./so_locations > test -z "tests/compat.sh jellyfish-1.1.pc" || rm -f tests/compat.sh > jellyfish-1.1.pc > rm -f config.h stamp-h1 > rm -f libtool config.lt > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > rm -rf jellyfish/.libs jellyfish/_libs > rm -f jellyfish/*.lo > test . = "." || test -z "" || rm -f > rm -f cscope.out cscope.in.out cscope.po.out cscope.files > test -z "test-suite.log" || rm -f test-suite.log > rm -f bin/.dirstamp > rm -f unit_tests/*.o > rm -f unit_tests/gtest/src/*.o > rm -f jellyfish/.deps/.dirstamp > rm -f jellyfish/.dirstamp > rm -f unit_tests/.deps/.dirstamp > rm -f unit_tests/.dirstamp > rm -f unit_tests/gtest/src/.deps/.dirstamp > rm -f unit_tests/gtest/src/.dirstamp > rm -f config.status config.cache config.log configure.lineno > config.status.lineno > rm -f jellyfish/.deps/allocators_mmap.Plo > rm -f jellyfish/.deps/backtrace.Plo > rm -f jellyfish/.deps/cite.Po > rm -f jellyfish/.deps/dbg.Plo > rm -f jellyfish/.deps/dna_codes.Plo > rm -f jellyfish/.deps/dump_fastq_main.Po > rm -f jellyfish/.deps/dump_main.Po > rm -f jellyfish/.deps/err.Plo > rm -f jellyfish/.deps/file_parser.Plo > rm -f jellyfish/.deps/floats.Plo > rm -f jellyfish/.deps/generate_sequence.Po > rm -f jellyfish/.deps/half.Plo > rm -f jellyfish/.deps/hash_fastq_merge.Po > rm -f jellyfish/.deps/hash_merge.Po > rm -f jellyfish/.deps/histo_fastq_main.Po > rm -f jellyfish/.deps/histo_main.Po > rm -f jellyfish/.deps/jellyfish.Po > rm -f jellyfish/.deps/mapped_file.Plo > rm -f jellyfish/.deps/mer_counter.Po > rm -f jellyfish/.deps/mersenne.Po > rm -f jellyfish/.deps/misc.Plo > rm -f jellyfish/.deps/parse_dna.Plo > rm -f jellyfish/.deps/parse_quake.Plo > rm -f jellyfish/.deps/parse_qual_dna.Plo > rm -f jellyfish/.deps/parse_read.Plo > rm -f jellyfish/.deps/query_main.Po > rm -f jellyfish/.deps/read_parser.Plo > rm -f jellyfish/.deps/seq_qual_parser.Plo > rm -f jellyfish/.deps/sequence_parser.Plo > rm -f jellyfish/.deps/square_binary_matrix.Plo > rm -f jellyfish/.deps/stats_main.Po > rm -f jellyfish/.deps/storage.Plo > rm -f jellyfish/.deps/test_double_fifo_input.Po > rm -f jellyfish/.deps/test_read_parser.Po > rm -f jellyfish/.deps/thread_exec.Plo > rm -f jellyfish/.deps/time.Plo > rm -f jellyfish/.deps/yaggo.Po > rm -f unit_tests/.deps/bin_test_all-test_offsets_key_value.Po > rm -f unit_tests/.deps/bin_test_all-test_simple_circular_buffer.Po > rm -f unit_tests/.deps/bin_test_all-test_square_binary_matrix.Po > rm -f unit_tests/gtest/src/.deps/libgtest_a-gtest-all.Po > rm -f unit_tests/gtest/src/.deps/libgtest_main_a-gtest_main.Po > rm -f Makefile > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_autoreconf_clean > debian/rules override_dh_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > dh_clean > if [ -d debian/tmp_save_tests ] ; then \ > mv debian/tmp_save_tests/* tests ; \ > rmdir debian/tmp_save_tests ; \ > fi > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dpkg-source -b . > dpkg-source: info: using source format '3.0 (quilt)' > dpkg-source: info: building jellyfish1 using existing > ./jellyfish1_1.1.11.orig.tar.gz > dpkg-source: info: using patch list from debian/patches/series > dpkg-source: warning: ignoring deletion of file install-sh, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file aclocal.m4, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file Makefile.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file ltmain.sh, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file configure, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file config.h.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file depcomp, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file missing, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file m4/ltsugar.m4, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file m4/lt~obsolete.m4, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file m4/ltversion.m4, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file m4/libtool.m4, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file m4/ltoptions.m4, use > --include-removal to override > dpkg-source: info: local changes detected, the modified files are: > jellyfish1-1.1.11/tests/compat.sh > dpkg-source: error: aborting due to unexpected upstream changes, see > /tmp/jellyfish1_1.1.11-8.diff._PXNPE > dpkg-source: info: Hint: make sure the version in debian/changelog matches > the unpacked source tree > dpkg-source: info: you can integrate the local changes with dpkg-source > --commit > dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -S' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/13/jellyfish1_1.1.11-8_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
