Source: petsc Version: 3.18.6+dfsg1-1 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-sab-20230813 ftbfs-source-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -S > ------------------------------------------------------------------------------------------------------------------------ > > dpkg-buildpackage: info: source package petsc > dpkg-buildpackage: info: source version 3.18.6+dfsg1-1 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Drew Parsons <[email protected]> > dpkg-source --before-build . > fakeroot debian/rules clean > dh clean --with python3,fortran_mod > debian/rules override_dh_auto_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > if [ -d x86_64-linux-gnu-real-debug -a -f > x86_64-linux-gnu-real-debug/lib/petsc/conf/petscrules ]; then \ > dh_auto_clean -plibpetsc-real3.18-dbg -ppetsc3.18-doc -- \ > PETSC_DIR=/<<PKGBUILDDIR>> PETSC_ARCH=x86_64-linux-gnu-real-debug; \ > fi > make -j8 distclean PETSC_DIR=/<<BUILDDIR>>/petsc-3.18.6\+dfsg1 > PETSC_ARCH=x86_64-linux-gnu-real-debug > make[2]: Entering directory '/<<PKGBUILDDIR>>' > sed: -e expression #1, char 42: unknown option to `s' > /bin/bash: line 4: [: too many arguments > *** Preserving > /<<PKGBUILDDIR>>/x86_64-linux-gnu-real-debug/lib/petsc/conf/reconfigure-x86_64-linux-gnu-real-debug.py > in /<<PKGBUILDDIR>> *** > *** Deleting all build files in /<<PKGBUILDDIR>>/x86_64-linux-gnu-real-debug > *** > /bin/rm -f -rf /<<PKGBUILDDIR>>/x86_64-linux-gnu-real-debug/ > make[2]: Leaving directory '/<<PKGBUILDDIR>>' > if [ -d x86_64-linux-gnu-real -a -f > x86_64-linux-gnu-real/lib/petsc/conf/petscrules ]; then \ > dh_auto_clean -plibpetsc-real3.18-dev -- \ > PETSC_DIR=/<<PKGBUILDDIR>> PETSC_ARCH=x86_64-linux-gnu-real; \ > fi > make -j8 distclean PETSC_DIR=/<<BUILDDIR>>/petsc-3.18.6\+dfsg1 > PETSC_ARCH=x86_64-linux-gnu-real > make[2]: Entering directory '/<<PKGBUILDDIR>>' > sed: -e expression #1, char 42: unknown option to `s' > /bin/bash: line 4: [: too many arguments > *** Preserving > /<<PKGBUILDDIR>>/x86_64-linux-gnu-real/lib/petsc/conf/reconfigure-x86_64-linux-gnu-real.py > in /<<PKGBUILDDIR>> *** > *** Deleting all build files in /<<PKGBUILDDIR>>/x86_64-linux-gnu-real *** > /bin/rm -f -rf /<<PKGBUILDDIR>>/x86_64-linux-gnu-real/ > make[2]: Leaving directory '/<<PKGBUILDDIR>>' > if [ -d x86_64-linux-gnu-complex -a -f > x86_64-linux-gnu-complex/lib/petsc/conf/petscrules ]; then \ > dh_auto_clean -plibpetsc-complex3.18-dev -- \ > PETSC_DIR=/<<PKGBUILDDIR>> PETSC_ARCH=x86_64-linux-gnu-complex; \ > fi > make -j8 distclean PETSC_DIR=/<<BUILDDIR>>/petsc-3.18.6\+dfsg1 > PETSC_ARCH=x86_64-linux-gnu-complex > make[2]: Entering directory '/<<PKGBUILDDIR>>' > sed: -e expression #1, char 42: unknown option to `s' > /bin/bash: line 4: [: too many arguments > *** Preserving > /<<PKGBUILDDIR>>/x86_64-linux-gnu-complex/lib/petsc/conf/reconfigure-x86_64-linux-gnu-complex.py > in /<<PKGBUILDDIR>> *** > *** Deleting all build files in /<<PKGBUILDDIR>>/x86_64-linux-gnu-complex *** > /bin/rm -f -rf /<<PKGBUILDDIR>>/x86_64-linux-gnu-complex/ > make[2]: Leaving directory '/<<PKGBUILDDIR>>' > if [ -d x86_64-linux-gnu-complex-debug -a -f > x86_64-linux-gnu-complex-debug/lib/petsc/conf/petscrules ]; then \ > dh_auto_clean -plibpetsc-complex3.18-dbg -- \ > PETSC_DIR=/<<PKGBUILDDIR>> PETSC_ARCH=x86_64-linux-gnu-complex-debug; \ > fi > make -j8 distclean PETSC_DIR=/<<BUILDDIR>>/petsc-3.18.6\+dfsg1 > PETSC_ARCH=x86_64-linux-gnu-complex-debug > make[2]: Entering directory '/<<PKGBUILDDIR>>' > sed: -e expression #1, char 42: unknown option to `s' > /bin/bash: line 4: [: too many arguments > *** Preserving > /<<PKGBUILDDIR>>/x86_64-linux-gnu-complex-debug/lib/petsc/conf/reconfigure-x86_64-linux-gnu-complex-debug.py > in /<<PKGBUILDDIR>> *** > *** Deleting all build files in > /<<PKGBUILDDIR>>/x86_64-linux-gnu-complex-debug *** > /bin/rm -f -rf /<<PKGBUILDDIR>>/x86_64-linux-gnu-complex-debug/ > make[2]: Leaving directory '/<<PKGBUILDDIR>>' > if [ -d x86_64-linux-gnu-real-debug -a -f > x86_64-linux-gnu-real-debug/lib/petsc/conf/petscrules ]; then \ > dh_auto_clean -plibpetsc-real3.18-dbg -ppetsc3.18-doc -- \ > PETSC_DIR=/<<PKGBUILDDIR>> PETSC_ARCH=x86_64-linux-gnu-real-debug; \ > fi > if [ -d x86_64-linux-gnu-real-64 -a -f > x86_64-linux-gnu-real-64/lib/petsc/conf/petscrules ]; then \ > dh_auto_clean -plibpetsc64-real3.18-dev -- \ > PETSC_DIR=/<<PKGBUILDDIR>> PETSC_ARCH=x86_64-linux-gnu-real-64; \ > fi > make -j8 distclean PETSC_DIR=/<<BUILDDIR>>/petsc-3.18.6\+dfsg1 > PETSC_ARCH=x86_64-linux-gnu-real-64 > make[2]: Entering directory '/<<PKGBUILDDIR>>' > sed: -e expression #1, char 42: unknown option to `s' > /bin/bash: line 4: [: too many arguments > *** Preserving > /<<PKGBUILDDIR>>/x86_64-linux-gnu-real-64/lib/petsc/conf/reconfigure-x86_64-linux-gnu-real-64.py > in /<<PKGBUILDDIR>> *** > *** Deleting all build files in /<<PKGBUILDDIR>>/x86_64-linux-gnu-real-64 *** > /bin/rm -f -rf /<<PKGBUILDDIR>>/x86_64-linux-gnu-real-64/ > make[2]: Leaving directory '/<<PKGBUILDDIR>>' > if [ -d x86_64-linux-gnu-complex-64 -a -f > x86_64-linux-gnu-complex-64/lib/petsc/conf/petscrules ]; then \ > dh_auto_clean -plibpetsc64-complex3.18-dev -- \ > PETSC_DIR=/<<PKGBUILDDIR>> PETSC_ARCH=x86_64-linux-gnu-complex-64; \ > fi > make -j8 distclean PETSC_DIR=/<<BUILDDIR>>/petsc-3.18.6\+dfsg1 > PETSC_ARCH=x86_64-linux-gnu-complex-64 > make[2]: Entering directory '/<<PKGBUILDDIR>>' > sed: -e expression #1, char 42: unknown option to `s' > /bin/bash: line 4: [: too many arguments > *** Preserving > /<<PKGBUILDDIR>>/x86_64-linux-gnu-complex-64/lib/petsc/conf/reconfigure-x86_64-linux-gnu-complex-64.py > in /<<PKGBUILDDIR>> *** > *** Deleting all build files in /<<PKGBUILDDIR>>/x86_64-linux-gnu-complex-64 > *** > /bin/rm -f -rf /<<PKGBUILDDIR>>/x86_64-linux-gnu-complex-64/ > make[2]: Leaving directory '/<<PKGBUILDDIR>>' > if [ -d x86_64-linux-gnu-complex-debug-64 -a -f > x86_64-linux-gnu-complex-debug-64/lib/petsc/conf/petscrules ]; then \ > dh_auto_clean -plibpetsc64-complex3.18-dbg -- \ > PETSC_DIR=/<<PKGBUILDDIR>> PETSC_ARCH=x86_64-linux-gnu-complex-debug-64; \ > fi > make -j8 distclean PETSC_DIR=/<<BUILDDIR>>/petsc-3.18.6\+dfsg1 > PETSC_ARCH=x86_64-linux-gnu-complex-debug-64 > make[2]: Entering directory '/<<PKGBUILDDIR>>' > sed: -e expression #1, char 42: unknown option to `s' > /bin/bash: line 4: [: too many arguments > *** Preserving > /<<PKGBUILDDIR>>/x86_64-linux-gnu-complex-debug-64/lib/petsc/conf/reconfigure-x86_64-linux-gnu-complex-debug-64.py > in /<<PKGBUILDDIR>> *** > *** Deleting all build files in > /<<PKGBUILDDIR>>/x86_64-linux-gnu-complex-debug-64 *** > /bin/rm -f -rf /<<PKGBUILDDIR>>/x86_64-linux-gnu-complex-debug-64/ > make[2]: Leaving directory '/<<PKGBUILDDIR>>' > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > debian/rules override_dh_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > if [ -d x86_64-linux-gnu-real-debug -a -f > x86_64-linux-gnu-real-debug/lib/petsc/conf/petscrules ]; then \ > dh_auto_clean -plibpetsc-real3.18-dbg -ppetsc3.18-doc -- \ > PETSC_DIR=/<<PKGBUILDDIR>> PETSC_ARCH=x86_64-linux-gnu-real-debug; \ > fi > if [ -d x86_64-linux-gnu-real -a -f > x86_64-linux-gnu-real/lib/petsc/conf/petscrules ]; then \ > dh_auto_clean -plibpetsc-real3.18-dev -- \ > PETSC_DIR=/<<PKGBUILDDIR>> PETSC_ARCH=x86_64-linux-gnu-real; \ > fi > if [ -d x86_64-linux-gnu-complex -a -f > x86_64-linux-gnu-complex/lib/petsc/conf/petscrules ]; then \ > dh_auto_clean -plibpetsc-complex3.18-dev -- \ > PETSC_DIR=/<<PKGBUILDDIR>> PETSC_ARCH=x86_64-linux-gnu-complex; \ > fi > if [ -d x86_64-linux-gnu-complex-debug -a -f > x86_64-linux-gnu-complex-debug/lib/petsc/conf/petscrules ]; then \ > dh_auto_clean -plibpetsc-complex3.18-dbg -- \ > PETSC_DIR=/<<PKGBUILDDIR>> PETSC_ARCH=x86_64-linux-gnu-complex-debug; \ > fi > if [ -d x86_64-linux-gnu-real-debug -a -f > x86_64-linux-gnu-real-debug/lib/petsc/conf/petscrules ]; then \ > dh_auto_clean -plibpetsc-real3.18-dbg -ppetsc3.18-doc -- \ > PETSC_DIR=/<<PKGBUILDDIR>> PETSC_ARCH=x86_64-linux-gnu-real-debug; \ > fi > if [ -d x86_64-linux-gnu-real-64 -a -f > x86_64-linux-gnu-real-64/lib/petsc/conf/petscrules ]; then \ > dh_auto_clean -plibpetsc64-real3.18-dev -- \ > PETSC_DIR=/<<PKGBUILDDIR>> PETSC_ARCH=x86_64-linux-gnu-real-64; \ > fi > if [ -d x86_64-linux-gnu-complex-64 -a -f > x86_64-linux-gnu-complex-64/lib/petsc/conf/petscrules ]; then \ > dh_auto_clean -plibpetsc64-complex3.18-dev -- \ > PETSC_DIR=/<<PKGBUILDDIR>> PETSC_ARCH=x86_64-linux-gnu-complex-64; \ > fi > if [ -d x86_64-linux-gnu-complex-debug-64 -a -f > x86_64-linux-gnu-complex-debug-64/lib/petsc/conf/petscrules ]; then \ > dh_auto_clean -plibpetsc64-complex3.18-dbg -- \ > PETSC_DIR=/<<PKGBUILDDIR>> PETSC_ARCH=x86_64-linux-gnu-complex-debug-64; \ > fi > dh_clean > rm -f *.log *.log.bkp configtest.mod > rm -f src/vec/vec/tests/x.h5 > rm -f lib/petsc/conf/petscvariables > rm -f reconfigure-*.py > find config -name *.pyc | xargs rm -f > rm -f CMakeLists.txt simplemake > rm -rf x86_64-linux-gnu-real x86_64-linux-gnu-real-debug > x86_64-linux-gnu-complex x86_64-linux-gnu-complex-debug \ > x86_64-linux-gnu-real-64 x86_64-linux-gnu-real-debug-64 > x86_64-linux-gnu-complex-64 x86_64-linux-gnu-complex-debug-64 > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dpkg-source -b . > dpkg-source: info: using source format '3.0 (quilt)' > dpkg-source: info: building petsc using existing > ./petsc_3.18.6+dfsg1.orig.tar.xz > dpkg-source: info: using patch list from debian/patches/series > dpkg-source: warning: ignoring deletion of file TAGS, use --include-removal > to override > dpkg-source: error: cannot represent change to > lib/petsc/bin/__pycache__/petscnagupgrade.cpython-311.pyc: binary file > contents changed > dpkg-source: error: add > lib/petsc/bin/__pycache__/petscnagupgrade.cpython-311.pyc in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: unrepresentable changes to source > dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -S' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/13/petsc_3.18.6+dfsg1-1_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
