Source: ipig Version: 0.0.r5-4 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-sab-20230813 ftbfs-source-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -S > ---------------------------------------------------------------------------------------------------------------- > > dpkg-buildpackage: info: source package ipig > dpkg-buildpackage: info: source version 0.0.r5-4 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Andreas Tille <[email protected]> > dpkg-source --before-build . > debian/rules clean > dh clean --with javahelper > dh_auto_clean > ant clean > Buildfile: /<<PKGBUILDDIR>>/build.xml > > clean: > [echo] Cleaning build directories > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/GeneControl.class > [delete] Deleting /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/Ipig.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/data/Exporter.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/data/Gene.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/data/GeneSet.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/data/MzIdentML$1.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/data/MzIdentML$Peptide.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/data/MzIdentML$Protein.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/data/MzIdentML$Result.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/data/MzIdentML.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/data/Peptide.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/data/PeptideSet$1.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/data/PeptideSet$PeptideComparator.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/data/PeptideSet.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/exceptions/ExitException.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/exceptions/FormatException.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader$1.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader$10.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader$11.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader$12.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader$13.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader$14.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader$15.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader$16.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader$17.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader$18.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader$2.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader$3.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader$4.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader$5.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader$6.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader$7.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader$8.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader$9.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader$Loader.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader$Organism.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/Downloader.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/GeneControlGui$1.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/GeneControlGui$10.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/GeneControlGui$11.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/GeneControlGui$12.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/GeneControlGui$2.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/GeneControlGui$3.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/GeneControlGui$4.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/GeneControlGui$5.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/GeneControlGui$6.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/GeneControlGui$7.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/GeneControlGui$8.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/GeneControlGui$9.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/GeneControlGui$Control.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/GeneControlGui.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$1.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$10.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$11.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$12.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$13.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$14.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$15.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$16.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$17.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$18.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$19.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$2.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$20.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$21.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$22.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$23.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$3.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$4.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$5.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$6.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$7.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$8.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$9.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui$Mapper.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/IpigGui.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/OutputJTextArea$1.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/OutputJTextArea$2.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/OutputJTextArea.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/ProxyDialog$1.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/ProxyDialog$2.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/ProxyDialog$3.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui/ProxyDialog.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/mapping/Mapper.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/mapping/Position$PositionComparator.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/mapping/Position.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/mapping/Validator.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/mapping/WuManber.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/tools/Configurator.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/tools/Info.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/tools/Logger.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/tools/MascotCSV2TXT.class > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/tools/Translator.class > [delete] Deleting /<<PKGBUILDDIR>>/build/classes/help/downloader_help.txt > [delete] Deleting > /<<PKGBUILDDIR>>/build/classes/help/genecontrolgui_help.txt > [delete] Deleting /<<PKGBUILDDIR>>/build/classes/help/ipig_help.txt > [delete] Deleting /<<PKGBUILDDIR>>/build/classes/help/ipiggui_help.txt > [delete] Deleting /<<PKGBUILDDIR>>/build/classes/images/rki.png > [delete] Deleting /<<PKGBUILDDIR>>/build/classes/organisms > [delete] Deleting /<<PKGBUILDDIR>>/build/classes/xsd/FuGElightv1.0.0.xsd > [delete] Deleting /<<PKGBUILDDIR>>/build/classes/xsd/mzIdentML1.0.0.xsd > [delete] Deleting /<<PKGBUILDDIR>>/build/classes/xsd > [delete] Deleting /<<PKGBUILDDIR>>/build/classes/images > [delete] Deleting /<<PKGBUILDDIR>>/build/classes/help > [delete] Deleting /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/tools > [delete] Deleting /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/mapping > [delete] Deleting /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/gui > [delete] Deleting /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/exceptions > [delete] Deleting /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig/data > [delete] Deleting /<<PKGBUILDDIR>>/build/classes/de/rki/ng4/ipig > [delete] Deleting /<<PKGBUILDDIR>>/build/classes/de/rki/ng4 > [delete] Deleting /<<PKGBUILDDIR>>/build/classes/de/rki > [delete] Deleting /<<PKGBUILDDIR>>/build/classes/de > [delete] Deleting /<<PKGBUILDDIR>>/build/classes > [delete] Deleting /<<PKGBUILDDIR>>/build > > BUILD SUCCESSFUL > Total time: 0 seconds > jh_clean > debian/rules override_dh_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > rm -f build.xml > dh_clean > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dpkg-source -b . > dpkg-source: info: using source format '3.0 (quilt)' > dpkg-source: info: building ipig using existing ./ipig_0.0.r5.orig.tar.xz > dpkg-source: error: cannot represent change to dist/iPiG.jar: binary file > contents changed > dpkg-source: error: add dist/iPiG.jar in debian/source/include-binaries if > you want to store the modified binary in the debian tarball > dpkg-source: error: unrepresentable changes to source > dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -S' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/13/ipig_0.0.r5-4_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
