Source: jalview Version: 2.11.2.6+dfsg-1 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-sab-20230813 ftbfs-source-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -S > ----------------------------------------------------------------------------------------------------------------------------- > > dpkg-buildpackage: info: source package jalview > dpkg-buildpackage: info: source version 2.11.2.6+dfsg-1 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Pierre Gruet <[email protected]> > dpkg-source --before-build . > debian/rules clean > dh clean --with javahelper --with maven_repo_helper > debian/rules override_dh_auto_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > # Removing our handmade pom. > rm -f pom.xml > # Removing the jars we gathered for the build and the tests. > rm -f -rf cpJars > dh_auto_clean > sh -c "find . -wholename .*build/tmp | xargs echo | sed -e > 's^build/tmp^build^g' | xargs rm -Rf" > sh -c "find . -wholename .*build/debian | xargs echo | sed -e > 's^build/tmp^build^g' | xargs rm -Rf" > rm -Rf /<<BUILDDIR>>/jalview-2.11.2.6\+dfsg/.gradle > /<<BUILDDIR>>/jalview-2.11.2.6\+dfsg/buildSrc/.gradle .m2 > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > jh_clean > dh_clean > dpkg-source -b . > dpkg-source: info: using source format '3.0 (quilt)' > dpkg-source: info: building jalview using existing > ./jalview_2.11.2.6+dfsg.orig.tar.xz > dpkg-source: info: using patch list from debian/patches/series > dpkg-source: warning: ignoring deletion of directory build > dpkg-source: error: cannot represent change to > classes/com/github/reinert/jjschema/Attributes.class: binary file contents > changed > dpkg-source: error: add classes/com/github/reinert/jjschema/Attributes.class > in debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > classes/com/stevesoft/pat/AmpersandRule.class: binary file contents changed > dpkg-source: error: add classes/com/stevesoft/pat/AmpersandRule.class in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > classes/com/stevesoft/pat/Any.class: binary file contents changed > dpkg-source: error: add classes/com/stevesoft/pat/Any.class in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > classes/com/stevesoft/pat/BackG.class: binary file contents changed > dpkg-source: error: add classes/com/stevesoft/pat/BackG.class in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > classes/com/stevesoft/pat/BackMatch.class: binary file contents changed > dpkg-source: error: add classes/com/stevesoft/pat/BackMatch.class in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > classes/com/stevesoft/pat/BackRefRule.class: binary file contents changed > dpkg-source: error: add classes/com/stevesoft/pat/BackRefRule.class in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > classes/com/stevesoft/pat/Backup.class: binary file contents changed > dpkg-source: error: add classes/com/stevesoft/pat/Backup.class in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > classes/com/stevesoft/pat/BadRangeArgs.class: binary file contents changed > dpkg-source: error: add classes/com/stevesoft/pat/BadRangeArgs.class in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > classes/com/stevesoft/pat/BasicStringBufferLike.class: binary file contents > changed > dpkg-source: error: add classes/com/stevesoft/pat/BasicStringBufferLike.class > in debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > classes/com/stevesoft/pat/Bits.class: binary file contents changed > dpkg-source: error: add classes/com/stevesoft/pat/Bits.class in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > classes/com/stevesoft/pat/Boundary.class: binary file contents changed > dpkg-source: error: add classes/com/stevesoft/pat/Boundary.class in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > classes/com/stevesoft/pat/Bracket.class: binary file contents changed > dpkg-source: error: add classes/com/stevesoft/pat/Bracket.class in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > classes/com/stevesoft/pat/Branch.class: binary file contents changed [...] > dpkg-source: error: add tests/junit/extensions/PrivilegedAccessor.class in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to tests/mc_view/AtomTest.class: > binary file contents changed > dpkg-source: error: add tests/mc_view/AtomTest.class in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to tests/mc_view/BondTest.class: > binary file contents changed > dpkg-source: error: add tests/mc_view/BondTest.class in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/mc_view/PDBChainTest.class: binary file contents changed > dpkg-source: error: add tests/mc_view/PDBChainTest.class in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/mc_view/PDBfileTest.class: binary file contents changed > dpkg-source: error: add tests/mc_view/PDBfileTest.class in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/mc_view/ResidueTest.class: binary file contents changed > dpkg-source: error: add tests/mc_view/ResidueTest.class in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: unrepresentable changes to source > dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -S' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/13/jalview_2.11.2.6+dfsg-1_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
