Source: proalign Version: 0.603-5 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-sab-20230813 ftbfs-source-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -S > ----------------------------------------------------------------------------------------------------------------------- > > dpkg-buildpackage: info: source package proalign > dpkg-buildpackage: info: source version 0.603-5 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Andreas Tille <[email protected]> > dpkg-source --before-build . > debian/rules clean > dh clean > dh_clean > dpkg-source -b . > dpkg-source: error: unwanted binary file: > debian/_jh_build.javadoc/api/resources/x.png > dpkg-source: error: unwanted binary file: > debian/_jh_build.javadoc/api/resources/glass.png > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/ResultWindow$MiceListener.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/MinimumProbWindow$1.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/SampleAlignments.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/ResultWindow$SplitListener.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/UserSettings.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/CheckSequence.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/NicePrint.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/SampleAlignments$1.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/PrintMinimumCurve$MiceListener.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/TraceBackException.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/PrintNames$MiceListener.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/ResultWindow$FileMenuListener.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/OutFile.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/NeighborJoining.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/Rule.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/PrintData.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/PrintData$MiceListener.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/PixelRule.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/OpenFolderChooser.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/RunCommandLine.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/AlignmentLoop.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/ResultWindow$AlignmentMenuListener.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/ResultWindow$1.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/ResultWindow$ScrollListener.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/ParameterEstimates.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/SetParameters$RadioListener.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/SubstitutionModel.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/SampleLoop.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/PrintNames.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/OutOfMemoryException.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/PwAlignment.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/PrintTree.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/AlignmentNode.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/SampleAlignments$CheckBoxListener.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/ResultWindow$ProbabilityMenuListener.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/SetParameters.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/TransformLog.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/PrintCurve.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/Viterbi.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/SaveData.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/WinClustalw.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/InFile.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/SetParameters$CheckBoxListener.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/TraceBackPath.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/CheckTrailing.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/PrintTree$MiceListener.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/PAFileFilter.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/QualityWindow.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/TreeReader.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/Rule$MiceListener.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/SetParameters$ButtonListener.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/TreeNode.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/ProAlign.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/SequenceReader.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/OpenDialog.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/MinimumProbWindow.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/RunMultiple.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/RunClustalw.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/CheckTreeAndData.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/EstimateFrequencies.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/PwSubstitutionMatrix.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/SampleAlignments$RadioListener.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/PrintCurve$MiceListener.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/SetParameters$ComboBoxListener.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/QualityWindow$1.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/SampleAlignments$ButtonL.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/SetParameters$1.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/PwAlignmentLoop.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/ResultWindow.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/PrintMinimumCurve.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/ResultWindow$FontMenuListener.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/OpenFileChooser.class > dpkg-source: error: unwanted binary file: > debian/_jh_build.proalign/proalign/ReadArguments.class > dpkg-source: error: detected 75 unwanted binary files (add them in > debian/source/include-binaries to allow their inclusion). > dpkg-source: info: using source format '3.0 (quilt)' > dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 255 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -S' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/13/proalign_0.603-5_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
