Source: netcdf-fortran Version: 4.6.0+really4.5.4+ds-3 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-sab-20230813 ftbfs-source-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -S > -------------------------------------------------------------------------------------------------------------------------------------------------- > > dpkg-buildpackage: info: source package netcdf-fortran > dpkg-buildpackage: info: source version 4.6.0+really4.5.4+ds-3 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Jelmer Vernooij <[email protected]> > dpkg-source --before-build . > fakeroot debian/rules clean > dh clean > dh_auto_clean > make -j8 distclean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > Making distclean in libsrc > make[2]: Entering directory '/<<PKGBUILDDIR>>/libsrc' > rm -rf .libs _libs > rm -f *.lo > test -z "" || rm -f > test . = "." || test -z "" || rm -f > rm -f Makefile > make[2]: Leaving directory '/<<PKGBUILDDIR>>/libsrc' > Making distclean in fortran > make[2]: Entering directory '/<<PKGBUILDDIR>>/fortran' > test -z "libnetcdff.la" || rm -f libnetcdff.la > rm -rf .libs _libs > test -z "libtypeSizes.la libnetcdf_nc_data.la libnetcdf_nf_data.la > libnetcdf_nc_interfaces.la libnetcdf_nf_interfaces.la libnetcdfm.la > libnetcdf_f03.la libnetcdf_fortv2_c_interfaces.la libnetcdf4_nc_interfaces.la > libnetcdf4_nf_interfaces.la libnetcdf4_f03.la" || rm -f libtypeSizes.la > libnetcdf_nc_data.la libnetcdf_nf_data.la libnetcdf_nc_interfaces.la > libnetcdf_nf_interfaces.la libnetcdfm.la libnetcdf_f03.la > libnetcdf_fortv2_c_interfaces.la libnetcdf4_nc_interfaces.la > libnetcdf4_nf_interfaces.la libnetcdf4_f03.la > rm -f *.o > test -z "*.mod netcdf.inc" || rm -f *.mod netcdf.inc > rm -f *.lo > rm -f *.tab.c > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > rm -f ./so_locations > rm -f ./so_locations > rm -f ./.deps/nf_lib.Plo > rm -f ./.deps/nf_v2compat.Plo > rm -f Makefile > make[2]: Leaving directory '/<<PKGBUILDDIR>>/fortran' > Making distclean in nf_test > make[2]: Entering directory '/<<PKGBUILDDIR>>/nf_test' > test -z "scratch*.nc test*.nc copy*.nc tst_*.nc ftst_*.nc f90tst_*.nc > f03test*.nc *.tmp *.tmp2 fort.* tst03*.nc f03tst*.nc ftest.nc fcopy.nc > nf03_error.F test03_read.F test03_write.F nf03_test.F test03_get.F f03test.F > tst03_f77_v2.F" || rm -f scratch*.nc test*.nc copy*.nc tst_*.nc ftst_*.nc > f90tst_*.nc f03test*.nc *.tmp *.tmp2 fort.* tst03*.nc f03tst*.nc ftest.nc > fcopy.nc nf03_error.F test03_read.F test03_write.F nf03_test.F test03_get.F > f03test.F tst03_f77_v2.F > rm -rf .libs _libs > test -z "libtests.la" || rm -f libtests.la > rm -f *.o > test -z "*.mod test-suite-memcheck.log test-suite-helgrind.log > test-suite-drd.log test-suite-sgcheck.log" || rm -f *.mod > test-suite-memcheck.log test-suite-helgrind.log test-suite-drd.log > test-suite-sgcheck.log > rm -f nf_test tst_int64 tst_f77_v2 ftest nf03_test f03test tst03_f77_v2 > rm -f *.lo > rm -f *.tab.c > test -z "fills.nc" || rm -f fills.nc > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test -z "nf_test.log tst_int64.log tst_f77_v2.log ftest.log nf03_test.log > f03test.log tst03_f77_v2.log" || rm -f nf_test.log tst_int64.log > tst_f77_v2.log ftest.log nf03_test.log f03test.log tst03_f77_v2.log > test . = "." || test -z "" || rm -f > rm -f ./so_locations > test -z "fills.nc" || rm -f fills.nc > test -z "nf_test.trs tst_int64.trs tst_f77_v2.trs ftest.trs nf03_test.trs > f03test.trs tst03_f77_v2.trs" || rm -f nf_test.trs tst_int64.trs > tst_f77_v2.trs ftest.trs nf03_test.trs f03test.trs tst03_f77_v2.trs > test -z "test-suite.log" || rm -f test-suite.log > rm -f ./.deps/f03lib.Po > rm -f Makefile > make[2]: Leaving directory '/<<PKGBUILDDIR>>/nf_test' > Making distclean in nf03_test > make[2]: Entering directory '/<<PKGBUILDDIR>>/nf03_test' > test -z "tst*.nc" || rm -f tst*.nc > rm -rf .libs _libs > rm -f *.o > rm -f tst_f90 tst_fill_int64 > test -z "tst_f90.log tst_fill_int64.log" || rm -f tst_f90.log > tst_fill_int64.log > rm -f *.lo > rm -f *.tab.c > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test -z "tst_f90.trs tst_fill_int64.trs" || rm -f tst_f90.trs > tst_fill_int64.trs > test . = "." || test -z "" || rm -f > test -z "test-suite.log" || rm -f test-suite.log > rm -f Makefile > make[2]: Leaving directory '/<<PKGBUILDDIR>>/nf03_test' > Making distclean in nf_test4 > make[2]: Entering directory '/<<PKGBUILDDIR>>/nf_test4' > test -z "ftst_*.nc f03tst_*.nc *.tmp *.tmp2 f03tst_groups.F f03tst_vars.F > f03tst_vars2.F f03tst_vars3.F f03tst_vars4.F f03tst_vars5.F f03tst_vars6.F > f03tst_types.F f03tst_types2.F f03tst_types3.F f03tst_v2.F > f03tst_var_szip.F" || rm -f ftst_*.nc f03tst_*.nc *.tmp *.tmp2 > f03tst_groups.F f03tst_vars.F f03tst_vars2.F f03tst_vars3.F f03tst_vars4.F > f03tst_vars5.F f03tst_vars6.F f03tst_types.F f03tst_types2.F f03tst_types3.F > f03tst_v2.F f03tst_var_szip.F > rm -rf .libs _libs > rm -f *.o > test -z "ftst_groups.log ftst_vars.log ftst_vars2.log ftst_vars3.log > ftst_vars4.log ftst_vars5.log ftst_vars6.log ftst_types.log ftst_types2.log > ftst_types3.log ftst_path.log ftst_rengrps.log f03tst_open_mem.log > ftst_var_compact.log ftst_v2.log ftst_var_szip.log f03tst_groups.log > f03tst_vars.log f03tst_vars2.log f03tst_vars3.log f03tst_vars4.log > f03tst_vars5.log f03tst_vars6.log f03tst_types.log f03tst_types2.log > f03tst_types3.log f03tst_v2.log f03tst_var_szip.log" || rm -f ftst_groups.log > ftst_vars.log ftst_vars2.log ftst_vars3.log ftst_vars4.log ftst_vars5.log > ftst_vars6.log ftst_types.log ftst_types2.log ftst_types3.log ftst_path.log > ftst_rengrps.log f03tst_open_mem.log ftst_var_compact.log ftst_v2.log > ftst_var_szip.log f03tst_groups.log f03tst_vars.log f03tst_vars2.log > f03tst_vars3.log > f03tst_vars4.log f03tst_vars5.log f03tst_vars6.log f03tst_types.log > f03tst_types2.log f03tst_types3.log f03tst_v2.log f03tst_var_szip.log > rm -f *.lo > rm -f ftst_groups ftst_vars ftst_vars2 ftst_vars3 ftst_vars4 ftst_vars5 > ftst_vars6 ftst_types ftst_types2 ftst_types3 ftst_path ftst_rengrps > f03tst_open_mem ftst_var_compact ftst_v2 ftst_var_szip f03tst_groups > f03tst_vars f03tst_vars2 f03tst_vars3 f03tst_vars4 f03tst_vars5 f03tst_vars6 > f03tst_types f03tst_types2 f03tst_types3 f03tst_v2 f03tst_var_szip > rm -f *.tab.c > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > test -z "ftst_groups.trs ftst_vars.trs ftst_vars2.trs ftst_vars3.trs > ftst_vars4.trs ftst_vars5.trs ftst_vars6.trs ftst_types.trs ftst_types2.trs > ftst_types3.trs ftst_path.trs ftst_rengrps.trs f03tst_open_mem.trs > ftst_var_compact.trs ftst_v2.trs ftst_var_szip.trs f03tst_groups.trs > f03tst_vars.trs f03tst_vars2.trs f03tst_vars3.trs f03tst_vars4.trs > f03tst_vars5.trs f03tst_vars6.trs f03tst_types.trs f03tst_types2.trs > f03tst_types3.trs f03tst_v2.trs f03tst_var_szip.trs" || rm -f ftst_groups.trs > ftst_vars.trs ftst_vars2.trs ftst_vars3.trs ftst_vars4.trs ftst_vars5.trs > ftst_vars6.trs ftst_types.trs ftst_types2.trs ftst_types3.trs ftst_path.trs > ftst_rengrps.trs f03tst_open_mem.trs ftst_var_compact.trs ftst_v2.trs > ftst_var_szip.trs f03tst_groups.trs f03tst_vars.trs f03tst_vars2.trs > f03tst_vars3.trs > f03tst_vars4.trs f03tst_vars5.trs f03tst_vars6.trs f03tst_types.trs > f03tst_types2.trs f03tst_types3.trs f03tst_v2.trs f03tst_var_szip.trs > test -z "test-suite.log" || rm -f test-suite.log > rm -f Makefile > make[2]: Leaving directory '/<<PKGBUILDDIR>>/nf_test4' > Making distclean in nf03_test4 > make[2]: Entering directory '/<<PKGBUILDDIR>>/nf03_test4' > test -z "f90tst_*.nc fort.*" || rm -f f90tst_*.nc fort.* > rm -rf .libs _libs > rm -f *.o > test -z "f90tst_vars.log f90tst_vars_vlen.log f90tst_grps.log f90tst_fill.log > f90tst_fill2.log f90tst_vars2.log f90tst_vars3.log f90tst_vars4.log > f90tst_path.log f90tst_rengrps.log f90tst_nc4.log f90tst_types.log > f90tst_types2.log f90tst_io.log f90tst_var_szip.log" || rm -f f90tst_vars.log > f90tst_vars_vlen.log f90tst_grps.log f90tst_fill.log f90tst_fill2.log > f90tst_vars2.log f90tst_vars3.log f90tst_vars4.log f90tst_path.log > f90tst_rengrps.log f90tst_nc4.log f90tst_types.log f90tst_types2.log > f90tst_io.log f90tst_var_szip.log > rm -f *.lo > rm -f *.tab.c > rm -f f90tst_vars f90tst_vars_vlen f90tst_grps f90tst_fill f90tst_fill2 > f90tst_vars2 f90tst_vars3 f90tst_vars4 f90tst_path f90tst_rengrps f90tst_nc4 > f90tst_types f90tst_types2 f90tst_io f90tst_var_szip > test -z "run_f90_par_test.sh" || rm -f run_f90_par_test.sh > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > test -z "f90tst_vars.trs f90tst_vars_vlen.trs f90tst_grps.trs f90tst_fill.trs > f90tst_fill2.trs f90tst_vars2.trs f90tst_vars3.trs f90tst_vars4.trs > f90tst_path.trs f90tst_rengrps.trs f90tst_nc4.trs f90tst_types.trs > f90tst_types2.trs f90tst_io.trs f90tst_var_szip.trs" || rm -f f90tst_vars.trs > f90tst_vars_vlen.trs f90tst_grps.trs f90tst_fill.trs f90tst_fill2.trs > f90tst_vars2.trs f90tst_vars3.trs f90tst_vars4.trs f90tst_path.trs > f90tst_rengrps.trs f90tst_nc4.trs f90tst_types.trs f90tst_types2.trs > f90tst_io.trs f90tst_var_szip.trs > test -z "test-suite.log" || rm -f test-suite.log > rm -f Makefile > make[2]: Leaving directory '/<<PKGBUILDDIR>>/nf03_test4' > Making distclean in docs > make[2]: Entering directory '/<<PKGBUILDDIR>>/docs' > test -z "doxyfile.stamp" || rm -f doxyfile.stamp > rm -rf .libs _libs > rm -rf ../docs/man > rm -f *.lo > test -z "Doxyfile" || rm -f Doxyfile > rm -rf ../docs/html > test . = "." || test -z "" || rm -f > rm -rf ../docs/latex > rm -rf ../docs/latex_main > rm -f Makefile > make[2]: Leaving directory '/<<PKGBUILDDIR>>/docs' > Making distclean in examples > make[2]: Entering directory '/<<PKGBUILDDIR>>/examples' > Making distclean in F77 > make[3]: Entering directory '/<<PKGBUILDDIR>>/examples/F77' > test -z "simple_xy.nc sfc_pres_temp.nc pres_temp_4D.nc simple_xy_nc4.nc" || > rm -f simple_xy.nc sfc_pres_temp.nc pres_temp_4D.nc simple_xy_nc4.nc > rm -rf .libs _libs > rm -f *.o > test -z "run_examples.sh.log run_examples_4.sh.log" || rm -f > run_examples.sh.log run_examples_4.sh.log > rm -f *.lo > rm -f *.tab.c > rm -f simple_xy_wr simple_xy_rd sfc_pres_temp_wr sfc_pres_temp_rd > pres_temp_4D_wr pres_temp_4D_rd simple_xy_nc4_wr simple_xy_nc4_rd > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > test -z "run_examples.sh.trs run_examples_4.sh.trs" || rm -f > run_examples.sh.trs run_examples_4.sh.trs > test -z "test-suite.log" || rm -f test-suite.log > rm -f Makefile > make[3]: Leaving directory '/<<PKGBUILDDIR>>/examples/F77' > Making distclean in F90 > make[3]: Entering directory '/<<PKGBUILDDIR>>/examples/F90' > rm -f simple_xy_wr simple_xy_rd sfc_pres_temp_wr sfc_pres_temp_rd > pres_temp_4D_wr pres_temp_4D_rd nc4_simple_xy_wr nc4_sfc_pres_temp_wr > nc4_pres_temp_4D_wr simple_xy_nc4_wr simple_xy_nc4_rd > test -z "simple_xy.nc sfc_pres_temp.nc pres_temp_4D.nc simple_xy_nc4.nc > simple_xy_par.nc nc4_simple_xy_wr.f90 simple_xy.cdl nc4_sfc_pres_temp_wr.f90 > sfc_pres_temp.cdl nc4_pres_temp_4d_wr.f90 pres_temp_4d.cdl nc4_simple_xy.nc > nc4_pres_temp_4D.nc nc4_sfc_pres_temp.nc " || rm -f simple_xy.nc > sfc_pres_temp.nc pres_temp_4D.nc simple_xy_nc4.nc simple_xy_par.nc > nc4_simple_xy_wr.f90 simple_xy.cdl nc4_sfc_pres_temp_wr.f90 sfc_pres_temp.cdl > nc4_pres_temp_4d_wr.f90 pres_temp_4d.cdl nc4_simple_xy.nc nc4_pres_temp_4D.nc > nc4_sfc_pres_temp.nc > rm -rf .libs _libs > rm -f *.o > test -z "run_examples.sh.log run_examples_4.sh.log" || rm -f > run_examples.sh.log run_examples_4.sh.log > test -z "run_examples.sh.trs run_examples_4.sh.trs" || rm -f > run_examples.sh.trs run_examples_4.sh.trs > test -z "test-suite.log" || rm -f test-suite.log > rm -f *.lo > rm -f *.tab.c > test -z "" || rm -f > test . = "." || test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > rm -f Makefile > make[3]: Leaving directory '/<<PKGBUILDDIR>>/examples/F90' > make[3]: Entering directory '/<<PKGBUILDDIR>>/examples' > rm -rf .libs _libs > rm -f *.lo > test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > make[3]: Leaving directory '/<<PKGBUILDDIR>>/examples' > rm -f Makefile > make[2]: Leaving directory '/<<PKGBUILDDIR>>/examples' > Making distclean in CMakeExtras > make[2]: Entering directory '/<<PKGBUILDDIR>>/CMakeExtras' > rm -rf .libs _libs > rm -f *.lo > test -z "" || rm -f > test . = "." || test -z "" || rm -f > rm -f Makefile > make[2]: Leaving directory '/<<PKGBUILDDIR>>/CMakeExtras' > make[2]: Entering directory '/<<PKGBUILDDIR>>' > rm -rf .libs _libs > rm -f *.lo > test -z "nf-config netcdf-fortran.pc libnetcdff.settings" || rm -f nf-config > netcdf-fortran.pc libnetcdff.settings > rm -f libtool config.lt > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > rm -f cscope.out cscope.in.out cscope.po.out cscope.files > test -z "VERSION libnetcdf.settings" || rm -f VERSION libnetcdf.settings > make[2]: Leaving directory '/<<PKGBUILDDIR>>' > rm -f config.status config.cache config.log configure.lineno > config.status.lineno > rm -f Makefile > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_autoreconf_clean > debian/rules override_dh_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > dh_clean > rm -f -r docs/doxygen_sqlite3.db docs/html/ docs/man/ docs/latex/ > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dpkg-source -b . > dpkg-source: info: using source format '3.0 (quilt)' > dpkg-source: info: building netcdf-fortran using existing > ./netcdf-fortran_4.6.0+really4.5.4+ds.orig.tar.xz > dpkg-source: info: using patch list from debian/patches/series > dpkg-source: warning: ignoring deletion of file Makefile.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file ltmain.sh, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file configure, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file fortran/Makefile.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file nf03_test4/Makefile.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file nf_test4/Makefile.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file m4/ltsugar.m4, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file m4/lt~obsolete.m4, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file m4/ltversion.m4, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file m4/libtool.m4, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file m4/ltoptions.m4, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file nf_test/Makefile.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file examples/Makefile.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file examples/F90/Makefile.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file examples/F77/Makefile.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file nf03_test/Makefile.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file docs/Makefile.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file CMakeExtras/Makefile.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file libsrc/Makefile.in, use > --include-removal to override > dpkg-source: info: local changes detected, the modified files are: > netcdf-fortran-4.6.0+really4.5.4+ds/docs/netcdf_f77.3 > netcdf-fortran-4.6.0+really4.5.4+ds/examples/F90/nc4_pres_temp_4D_wr.f90 > dpkg-source: error: aborting due to unexpected upstream changes, see > /tmp/netcdf-fortran_4.6.0+really4.5.4+ds-3.diff.y7XdSS > dpkg-source: info: Hint: make sure the version in debian/changelog matches > the unpacked source tree > dpkg-source: info: you can integrate the local changes with dpkg-source > --commit > dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -S' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/13/netcdf-fortran_4.6.0+really4.5.4+ds-3_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
