Source: pirs Version: 2.0.2+dfsg-11 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-sab-20230813 ftbfs-source-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -S > -------------------------------------------------------------------------------------------------------------------- > > dpkg-buildpackage: info: source package pirs > dpkg-buildpackage: info: source version 2.0.2+dfsg-11 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Andreas Tille <[email protected]> > dpkg-source --before-build . > debian/rules clean > dh clean --sourcedirectory=src > debian/rules override_dh_auto_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > dh_auto_clean > cd src && make -j8 distclean > make[2]: Entering directory '/<<PKGBUILDDIR>>/src' > Making distclean in pirs > make[3]: Entering directory '/<<PKGBUILDDIR>>/src/pirs' > test -z "pirs" || rm -f pirs > rm -f *.o > rm -f *.tab.c > test -z "" || rm -f > test . = "." || test -z "" || rm -f > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > rm -f ./.deps/BaseCallingProfile.Po > rm -f ./.deps/GCBiasProfile.Po > rm -f ./.deps/IndelProfile.Po > rm -f ./.deps/InputStream.Po > rm -f ./.deps/MaskQvalsByEamss.Po > rm -f ./.deps/OutputStream.Po > rm -f ./.deps/Profile.Po > rm -f ./.deps/SFMT.Po > rm -f ./.deps/main.Po > rm -f ./.deps/mt19937-64.Po > rm -f ./.deps/pirs_diploid.Po > rm -f ./.deps/pirs_simulate.Po > rm -f ./.deps/util.Po > rm -f Makefile > make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/pirs' > make[3]: Entering directory '/<<PKGBUILDDIR>>/src' > test -z "" || rm -f > test . = "." || test -z "" || rm -f > rm -f config.h stamp-h1 > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > rm -f cscope.out cscope.in.out cscope.po.out cscope.files > make[3]: Leaving directory '/<<PKGBUILDDIR>>/src' > rm -f config.status config.cache config.log configure.lineno > config.status.lineno > rm -f Makefile > make[2]: Leaving directory '/<<PKGBUILDDIR>>/src' > cd src && ./srclean.sh >/dev/null 2>/dev/null || true > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_autoreconf_clean -O--sourcedirectory=src > dh_clean -O--sourcedirectory=src > dpkg-source -b . > dpkg-source: info: using source format '3.0 (quilt)' > dpkg-source: info: building pirs using existing ./pirs_2.0.2+dfsg.orig.tar.xz > dpkg-source: info: using patch list from debian/patches/series > dpkg-source: error: cannot represent change to > src/stator/gcContCvgBias/gc_coverage_bias: binary file contents changed > dpkg-source: error: add src/stator/gcContCvgBias/gc_coverage_bias in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: executable mode 0755 of > 'src/stator/gcContCvgBias/gc_coverage_bias' will not be represented in diff > dpkg-source: error: cannot represent change to > src/stator/gcContCvgBias/main.o: binary file contents changed > dpkg-source: error: add src/stator/gcContCvgBias/main.o in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > src/stator/gcContCvgBias/self_util.h.gch: binary file contents changed > dpkg-source: error: add src/stator/gcContCvgBias/self_util.h.gch in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > src/stator/gcContCvgBias/self_util.o: binary file contents changed > dpkg-source: error: add src/stator/gcContCvgBias/self_util.o in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > src/stator/gcContCvgBias/stat_soap_coverage.h.gch: binary file contents > changed > dpkg-source: error: add src/stator/gcContCvgBias/stat_soap_coverage.h.gch in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > src/stator/gcContCvgBias/stat_soap_coverage.o: binary file contents changed > dpkg-source: error: add src/stator/gcContCvgBias/stat_soap_coverage.o in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: unrepresentable changes to source > dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -S' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/13/pirs_2.0.2+dfsg-11_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
