Source: librostlab-blast Version: 1.0.1-13 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-sab-20230813 ftbfs-source-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -S > --------------------------------------------------------------------------------------------------------------------------------------- > > dpkg-buildpackage: info: source package librostlab-blast > dpkg-buildpackage: info: source version 1.0.1-13 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Ãtienne Mollier > <[email protected]> > dpkg-source --before-build . > debian/rules clean > dh clean > debian/rules override_dh_auto_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > dh_auto_clean > make -j8 distclean > make[2]: Entering directory '/<<PKGBUILDDIR>>' > Making distclean in lib > make[3]: Entering directory '/<<PKGBUILDDIR>>/lib' > test -z "librostlab-blast.la" || rm -f librostlab-blast.la > rm -rf .libs _libs > rm -rf blast-parser-parser.cpp blast-parser-parser.output \ > rostlab/blast-parser-location.h rostlab/blast-parser-parser.h > rostlab/blast-parser-position.h rostlab/blast-parser-stack.h \ > stack.hh location.hh position.hh blast-parser-scanner.cpp lex.yy.cc \ > librostlab_blast_la-blast-parser-scanner.cpp > rm -f *.o > test -z "../doxygen-doc/librostlab-blast.tag -r ../doxygen-doc/html " > || rm -f ../doxygen-doc/librostlab-blast.tag -r ../doxygen-doc/html > rm -f *.lo > rm -f *.tab.c > test -z "Doxyfile" || rm -f Doxyfile > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > rm -f ./so_locations > rm -f ./.deps/librostlab_blast_la-blast-parser-driver.Plo > rm -f ./.deps/librostlab_blast_la-blast-parser-parser.Plo > rm -f ./.deps/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.Plo > rm -f Makefile > make[3]: Leaving directory '/<<PKGBUILDDIR>>/lib' > make[3]: Entering directory '/<<PKGBUILDDIR>>' > rm -rf .libs _libs > rm -f *.lo > test -z "" || rm -f > rm -f config.h stamp-h1 > rm -f libtool config.lt > rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags > test . = "." || test -z "" || rm -f > rm -f cscope.out cscope.in.out cscope.po.out cscope.files > make[3]: Leaving directory '/<<PKGBUILDDIR>>' > rm -f config.status config.cache config.log configure.lineno > config.status.lineno > rm -f Makefile > make[2]: Leaving directory '/<<PKGBUILDDIR>>' > rm -f lib/librostlab-blast.tag > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_autoreconf_clean > dh_clean > dpkg-source -b . > dpkg-source: info: using source format '3.0 (quilt)' > dpkg-source: info: building librostlab-blast using existing > ./librostlab-blast_1.0.1.orig.tar.gz > dpkg-source: info: using patch list from debian/patches/series > dpkg-source: warning: ignoring deletion of file config.hin, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file install-sh, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file aclocal.m4, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file INSTALL, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file Makefile.in, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file ltmain.sh, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file configure, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file depcomp, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file ylwrap, use --include-removal > to override > dpkg-source: warning: ignoring deletion of file missing, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file m4/ltsugar.m4, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file m4/lt~obsolete.m4, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file m4/ltversion.m4, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file m4/libtool.m4, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file m4/ltoptions.m4, use > --include-removal to override > dpkg-source: warning: ignoring deletion of file lib/Makefile.in, use > --include-removal to override > dpkg-source: warning: file > librostlab-blast-1.0.1/doxygen-doc/latex/blast-parser-driver_8h__incl.md5 has > no final newline (either original or modified version) > dpkg-source: error: cannot represent change to > doxygen-doc/latex/blast-parser-driver_8h__incl.pdf: binary file contents > changed > dpkg-source: error: add doxygen-doc/latex/blast-parser-driver_8h__incl.pdf in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: file > librostlab-blast-1.0.1/doxygen-doc/latex/blast-parser-location_8h__dep__incl.md5 > has no final newline (either original or modified version) > dpkg-source: error: cannot represent change to > doxygen-doc/latex/blast-parser-location_8h__dep__incl.pdf: binary file > contents changed > dpkg-source: error: add > doxygen-doc/latex/blast-parser-location_8h__dep__incl.pdf in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: file > librostlab-blast-1.0.1/doxygen-doc/latex/blast-parser-location_8h__incl.md5 > has no final newline (either original or modified version) > dpkg-source: error: cannot represent change to > doxygen-doc/latex/blast-parser-location_8h__incl.pdf: binary file contents > changed > dpkg-source: error: add doxygen-doc/latex/blast-parser-location_8h__incl.pdf > in debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: file > librostlab-blast-1.0.1/doxygen-doc/latex/blast-parser-parser_8h__dep__incl.md5 > has no final newline (either original or modified version) > dpkg-source: error: cannot represent change to > doxygen-doc/latex/blast-parser-parser_8h__dep__incl.pdf: binary file contents > changed > dpkg-source: error: add > doxygen-doc/latex/blast-parser-parser_8h__dep__incl.pdf in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: file > librostlab-blast-1.0.1/doxygen-doc/latex/blast-parser-parser_8h__incl.md5 has > no final newline (either original or modified version) > dpkg-source: error: cannot represent change to > doxygen-doc/latex/blast-parser-parser_8h__incl.pdf: binary file contents > changed > dpkg-source: error: add doxygen-doc/latex/blast-parser-parser_8h__incl.pdf in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: file > librostlab-blast-1.0.1/doxygen-doc/latex/blast-parser-position_8h__incl.md5 > has no final newline (either original or modified version) > dpkg-source: error: cannot represent change to > doxygen-doc/latex/blast-parser-position_8h__incl.pdf: binary file contents > changed > dpkg-source: error: add doxygen-doc/latex/blast-parser-position_8h__incl.pdf > in debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: file > librostlab-blast-1.0.1/doxygen-doc/latex/blast-result_8h__dep__incl.md5 has > no final newline (either original or modified version) > dpkg-source: error: cannot represent change to > doxygen-doc/latex/blast-result_8h__dep__incl.pdf: binary file contents changed > dpkg-source: error: add doxygen-doc/latex/blast-result_8h__dep__incl.pdf in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: file > librostlab-blast-1.0.1/doxygen-doc/latex/blast-result_8h__incl.md5 has no > final newline (either original or modified version) > dpkg-source: error: cannot represent change to > doxygen-doc/latex/blast-result_8h__incl.pdf: binary file contents changed > dpkg-source: error: add doxygen-doc/latex/blast-result_8h__incl.pdf in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: file > librostlab-blast-1.0.1/doxygen-doc/latex/classrostlab_1_1blast_1_1location__coll__graph.md5 > has no final newline (either original or modified version) > dpkg-source: error: cannot represent change to > doxygen-doc/latex/classrostlab_1_1blast_1_1location__coll__graph.pdf: binary > file contents changed > dpkg-source: error: add > doxygen-doc/latex/classrostlab_1_1blast_1_1location__coll__graph.pdf in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: file > librostlab-blast-1.0.1/doxygen-doc/latex/classrostlab_1_1blast_1_1parser__error__coll__graph.md5 > has no final newline (either original or modified version) > dpkg-source: error: cannot represent change to > doxygen-doc/latex/classrostlab_1_1blast_1_1parser__error__coll__graph.pdf: > binary file contents changed > dpkg-source: error: add > doxygen-doc/latex/classrostlab_1_1blast_1_1parser__error__coll__graph.pdf in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: file > librostlab-blast-1.0.1/doxygen-doc/latex/classrostlab_1_1blast_1_1parser__error__inherit__graph.md5 > has no final newline (either original or modified version) > dpkg-source: error: cannot represent change to > doxygen-doc/latex/classrostlab_1_1blast_1_1parser__error__inherit__graph.pdf: > binary file contents changed > dpkg-source: error: add > doxygen-doc/latex/classrostlab_1_1blast_1_1parser__error__inherit__graph.pdf > in debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: warning: file > librostlab-blast-1.0.1/doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1basic__symbol__coll__graph.md5 > has no final newline (either original or modified version) > dpkg-source: error: cannot represent change to > doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1basic__symbol__coll__graph.pdf: > binary file contents changed > dpkg-source: error: add > doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1basic__symbol__coll__graph.pdf > in debian/source/include-binaries if you want to store the modified binary > in the debian tarball > dpkg-source: warning: file > librostlab-blast-1.0.1/doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1basic__symbol__inherit__graph.md5 > has no final newline (either original or modified version) > dpkg-source: error: cannot represent change to > doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1basic__symbol__inherit__graph.pdf: > binary file contents changed > dpkg-source: error: add > doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1basic__symbol__inherit__graph.pdf > in debian/source/include-binaries if you want to store the modified binary > in the debian tarball > dpkg-source: warning: file > librostlab-blast-1.0.1/doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1by__kind__inherit__graph.md5 > has no final newline (either original or modified version) > dpkg-source: error: cannot represent change to > doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1by__kind__inherit__graph.pdf: > binary file contents changed > dpkg-source: error: add > doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1by__kind__inherit__graph.pdf > in debian/source/include-binaries if you want to store the modified binary > in the debian tarball > dpkg-source: warning: file > librostlab-blast-1.0.1/doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1symbol__type__coll__graph.md5 > has no final newline (either original or modified version) > dpkg-source: error: cannot represent change to > doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1symbol__type__coll__graph.pdf: > binary file contents changed > dpkg-source: error: add > doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1symbol__type__coll__graph.pdf > in debian/source/include-binaries if you want to store the modified binary > in the debian tarball > dpkg-source: warning: file > librostlab-blast-1.0.1/doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1symbol__type__inherit__graph.md5 > has no final newline (either original or modified version) > dpkg-source: error: cannot represent change to > doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1symbol__type__inherit__graph.pdf: > binary file contents changed > dpkg-source: error: add > doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1symbol__type__inherit__graph.pdf > in debian/source/include-binaries if you want to store the modified binary > in the debian tarball > dpkg-source: warning: file > librostlab-blast-1.0.1/doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1syntax__error__coll__graph.md5 > has no final newline (either original or modified version) > dpkg-source: error: cannot represent change to > doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1syntax__error__coll__graph.pdf: > binary file contents changed > dpkg-source: error: add > doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1syntax__error__coll__graph.pdf > in debian/source/include-binaries if you want to store the modified binary > in the debian tarball > dpkg-source: warning: file > librostlab-blast-1.0.1/doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1syntax__error__inherit__graph.md5 > has no final newline (either original or modified version) > dpkg-source: error: cannot represent change to > doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1syntax__error__inherit__graph.pdf: > binary file contents changed > dpkg-source: error: add > doxygen-doc/latex/structrostlab_1_1blast_1_1parser_1_1syntax__error__inherit__graph.pdf > in debian/source/include-binaries if you want to store the modified binary > in the debian tarball > dpkg-source: error: unrepresentable changes to source > dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -S' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/13/librostlab-blast_1.0.1-13_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
