Source: vcfanno Version: 0.3.5+ds-1 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-sab-20230813 ftbfs-source-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -S > ------------------------------------------------------------------------------------------------------------------------ > > dpkg-buildpackage: info: source package vcfanno > dpkg-buildpackage: info: source version 0.3.5+ds-1 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Nilesh Patra <[email protected]> > dpkg-source --before-build . > debian/rules clean > dh clean --buildsystem=golang --with=golang > dh_auto_clean -O--buildsystem=golang > dh_autoreconf_clean -O--buildsystem=golang > dh_clean -O--buildsystem=golang > dpkg-source -b . > dpkg-source: info: using source format '3.0 (quilt)' > dpkg-source: info: building vcfanno using existing > ./vcfanno_0.3.5+ds.orig.tar.xz > dpkg-source: info: using patch list from debian/patches/series > dpkg-source: warning: ignoring deletion of file tests/notbgz/notbgz.vcf.gz, > use --include-removal to override > dpkg-source: error: cannot represent change to > docs/examples/gff_sv/genes.gff3.gz.tbi: binary file contents changed > dpkg-source: error: add docs/examples/gff_sv/genes.gff3.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to example/ex.bam: binary file > contents changed > dpkg-source: error: add example/ex.bam in debian/source/include-binaries if > you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to example/ex.bam.bai: binary > file contents changed > dpkg-source: error: add example/ex.bam.bai in debian/source/include-binaries > if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to example/exac.vcf.gz.tbi: > binary file contents changed > dpkg-source: error: add example/exac.vcf.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to example/fitcons.bed.gz.tbi: > binary file contents changed > dpkg-source: error: add example/fitcons.bed.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/astar/astar.anno.vcf.gz.tbi: binary file contents changed > dpkg-source: error: add tests/astar/astar.anno.vcf.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/by_alt_float/annotation.tsv.gz.tbi: binary file contents changed > dpkg-source: error: add tests/by_alt_float/annotation.tsv.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/citest/at/testexon.bed.gz.tbi: binary file contents changed > dpkg-source: error: add tests/citest/at/testexon.bed.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/citest/dummyexons.bed.gz.tbi: binary file contents changed > dpkg-source: error: add tests/citest/dummyexons.bed.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/data/multiple-alts.vcf.gz.tbi: binary file contents changed > dpkg-source: error: add tests/data/multiple-alts.vcf.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to tests/data/number.vcf.gz.tbi: > binary file contents changed > dpkg-source: error: add tests/data/number.vcf.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/dbnsfp/dbNSFP_ex.txt.gz.tbi: binary file contents changed > dpkg-source: error: add tests/dbnsfp/dbNSFP_ex.txt.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/dbnsfp/dbNSFP_example.txt.gz.tbi: binary file contents changed > dpkg-source: error: add tests/dbnsfp/dbNSFP_example.txt.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/id-test/cosmic.small.vcf.gz.tbi: binary file contents changed > dpkg-source: error: add tests/id-test/cosmic.small.vcf.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/id-test/dbsnp.small.vcf.gz.tbi: binary file contents changed > dpkg-source: error: add tests/id-test/dbsnp.small.vcf.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/id-test/small.vcf.gz.tbi: binary file contents changed > dpkg-source: error: add tests/id-test/small.vcf.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/multiple-alts/ma-db.vcf.gz.tbi: binary file contents changed > dpkg-source: error: add tests/multiple-alts/ma-db.vcf.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to tests/notbgz/gno.vcf.gz.tbi: > binary file contents changed > dpkg-source: error: add tests/notbgz/gno.vcf.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/overwrite-multiple-alts/a/whole.vcf.gz.tbi: binary file contents changed > dpkg-source: error: add tests/overwrite-multiple-alts/a/whole.vcf.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/overwrite-multiple-alts/b/cadd_indels.vcf.gz.tbi: binary file contents > changed > dpkg-source: error: add > tests/overwrite-multiple-alts/b/cadd_indels.vcf.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/overwrite-multiple-alts/b/whole_genome_snv_slice.vcf.gz.tbi: binary > file contents changed > dpkg-source: error: add > tests/overwrite-multiple-alts/b/whole_genome_snv_slice.vcf.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/ref-alt-test/tmp_annotation.txt.gz.tbi: binary file contents changed > dpkg-source: error: add tests/ref-alt-test/tmp_annotation.txt.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/ref-alt-test/tmp_calls.vcf.gz.tbi: binary file contents changed > dpkg-source: error: add tests/ref-alt-test/tmp_calls.vcf.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: cannot represent change to > tests/testVA/test-gnomad.vcf.gz.tbi: binary file contents changed > dpkg-source: error: add tests/testVA/test-gnomad.vcf.gz.tbi in > debian/source/include-binaries if you want to store the modified binary in > the debian tarball > dpkg-source: error: unrepresentable changes to source > dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -S' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/13/vcfanno_0.3.5+ds-1_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
