Source: hmmer2 Version: 2.3.2+dfsg-8 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-binary-20230816 ftbfs-binary-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to do build a binary-only build (not source) after a successful build (dpkg-buildpackage ; dpkg-buildpackage -b). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/DoubleBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -b > ------------------------------------------------------------------------------------------------------------------------ > > dpkg-buildpackage: info: source package hmmer2 > dpkg-buildpackage: info: source version 2.3.2+dfsg-8 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Andreas Tille <[email protected]> > dpkg-source --before-build . > dpkg-buildpackage: info: host architecture amd64 > debian/rules clean > dh clean > dh_auto_clean > make -j8 distclean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > rm -rf binaries > rm config.log config.status > rm -rf autom4te.cache > rm -f *.o *~ Makefile.bak core TAGS gmon.out > rm Makefile > (cd src; make distclean) > make[2]: Entering directory '/<<PKGBUILDDIR>>/src' > make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make > rule. > make clean > make[3]: Entering directory '/<<PKGBUILDDIR>>/src' > rm -f *.o *~ Makefile.bak core hmmalign hmmbuild hmmcalibrate hmmconvert > hmmemit hmmfetch hmmindex hmmpfam hmmsearch TAGS gmon.out libhmmer.a > make[3]: Leaving directory '/<<PKGBUILDDIR>>/src' > rm -f Makefile > make[2]: Leaving directory '/<<PKGBUILDDIR>>/src' > (cd testsuite; make distclean) > make[2]: Entering directory '/<<PKGBUILDDIR>>/testsuite' > make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make > rule. > make clean > make[3]: Entering directory '/<<PKGBUILDDIR>>/testsuite' > rm -f *.o *~ Makefile.bak core alignalign_test evd_test masks_test > parsingviterbi_test tophits_test trace_test viterbi_exercise weeviterbi_test > TAGS gmon.out > make[3]: Leaving directory '/<<PKGBUILDDIR>>/testsuite' > rm -f Makefile > make[2]: Leaving directory '/<<PKGBUILDDIR>>/testsuite' > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_autoreconf_clean > debian/rules override_dh_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > if [ -e configure_not_used ] ; then mv configure_not_used configure; fi > rm -f configure.ac > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > debian/rules binary > dh binary > dh_prep > debian/rules override_dh_auto_install > make[1]: Entering directory '/<<PKGBUILDDIR>>' > dh_auto_install -- prefix=/<<PKGBUILDDIR>>/debian/tmp > # lkajan: rename binaries and man pages like this: s/hmm/hmm2/ - except > hmmer.1, rename that to hmmer2.1: > rename 's/^hmm/hmm2/;' /<<PKGBUILDDIR>>/debian/tmp/bin/* > cd /<<PKGBUILDDIR>>/debian/tmp/bin; rename 's/^hmm/hmm2/;' * > /bin/sh: 1: cd: can't cd to /<<PKGBUILDDIR>>/debian/tmp/bin > cd /<<PKGBUILDDIR>>/debian/tmp/share/man/man1; rename 's/^hmm/hmm2/;' * > /bin/sh: 1: cd: can't cd to /<<PKGBUILDDIR>>/debian/tmp/share/man/man1 > mv /<<PKGBUILDDIR>>/debian/tmp/share/man/man1/hmm2er.1 > /<<PKGBUILDDIR>>/debian/tmp/share/man/man1/hmmer2.1 > mv: cannot stat '/<<PKGBUILDDIR>>/debian/tmp/share/man/man1/hmm2er.1': No > such file or directory > make[1]: *** [debian/rules:50: override_dh_auto_install] Error 1 > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > make: *** [debian/rules:15: binary] Error 2 > dpkg-buildpackage: error: debian/rules binary subprocess returned exit status > 2 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -b' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/16/hmmer2_2.3.2+dfsg-8_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
