Source: scikit-learn Version: 1.2.1+dfsg-1 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-binary-20230816 ftbfs-binary-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to do build a binary-only build (not source) after a successful build (dpkg-buildpackage ; dpkg-buildpackage -b). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/DoubleBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -b > ------------------------------------------------------------------------------------------------------------------------------------ > > dpkg-buildpackage: info: source package scikit-learn > dpkg-buildpackage: info: source version 1.2.1+dfsg-1 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Andreas Tille <[email protected]> > dpkg-source --before-build . > dpkg-buildpackage: info: host architecture amd64 > debian/rules clean > dh clean --with python3 --buildsystem pybuild > dh_auto_clean -O--buildsystem=pybuild > I: pybuild base:291: python3.11 setup.py clean > Partial import of sklearn during the build process. > running clean > dh_autoreconf_clean -O--buildsystem=pybuild > debian/rules override_dh_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > dh_clean > rm -rf .pytest_cache build scikit_learn.egg-info tmp > mv PKG-INFO-BAK PKG-INFO > mv: cannot stat 'PKG-INFO-BAK': No such file or directory > make[1]: [debian/rules:135: override_dh_clean] Error 1 (ignored) > rm -f debian/build-stamp-* > for i in $(find -name '*.pyx'); do \ > rm -f ${i%.*}.c ${i%.*}.cpp; \ > done > for i in $(find -name '*.pyx.in'); do \ > rm -f ${i%.*}; \ > done > /usr/bin/make -C doc clean > make[2]: Entering directory '/<<PKGBUILDDIR>>/doc' > rm -rf _build/* > rm -rf auto_examples/ > rm -rf generated/* > rm -rf modules/generated/ > make[2]: Leaving directory '/<<PKGBUILDDIR>>/doc' > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > debian/rules binary > dh binary --with python3,sphinxdoc --buildsystem pybuild > dh_update_autotools_config -O--buildsystem=pybuild > dh_autoreconf -O--buildsystem=pybuild > debian/rules override_dh_auto_configure > make[1]: Entering directory '/<<PKGBUILDDIR>>' > mkdir -p tmp > mv PKG-INFO PKG-INFO-BAK > python3.11 setup.py config > Partial import of sklearn during the build process. > /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the > future `np.bool` will be defined as the corresponding NumPy scalar. > if not hasattr(numpy, method): > /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the > future `np.bytes` will be defined as the corresponding NumPy scalar. > obj = getattr(themodule, elem) > Compiling sklearn/__check_build/_check_build.pyx because it changed. > Compiling sklearn/_isotonic.pyx because it changed. > Compiling sklearn/_loss/_loss.pyx because it changed. > Compiling sklearn/cluster/_dbscan_inner.pyx because it changed. > Compiling sklearn/cluster/_hierarchical_fast.pyx because it changed. > Compiling sklearn/cluster/_k_means_common.pyx because it changed. > Compiling sklearn/cluster/_k_means_lloyd.pyx because it changed. > Compiling sklearn/cluster/_k_means_elkan.pyx because it changed. > Compiling sklearn/cluster/_k_means_minibatch.pyx because it changed. > Compiling sklearn/datasets/_svmlight_format_fast.pyx because it changed. > Compiling sklearn/decomposition/_online_lda_fast.pyx because it changed. > Compiling sklearn/decomposition/_cdnmf_fast.pyx because it changed. > Compiling sklearn/ensemble/_gradient_boosting.pyx because it changed. > Compiling sklearn/ensemble/_hist_gradient_boosting/_gradient_boosting.pyx > because it changed. > Compiling sklearn/ensemble/_hist_gradient_boosting/histogram.pyx because it > changed. > Compiling sklearn/ensemble/_hist_gradient_boosting/splitting.pyx because it > changed. > Compiling sklearn/ensemble/_hist_gradient_boosting/_binning.pyx because it > changed. > Compiling sklearn/ensemble/_hist_gradient_boosting/_predictor.pyx because it > changed. > Compiling sklearn/ensemble/_hist_gradient_boosting/_bitset.pyx because it > changed. > Compiling sklearn/ensemble/_hist_gradient_boosting/common.pyx because it > changed. > Compiling sklearn/ensemble/_hist_gradient_boosting/utils.pyx because it > changed. > Compiling sklearn/feature_extraction/_hashing_fast.pyx because it changed. > Compiling sklearn/linear_model/_cd_fast.pyx because it changed. > Compiling sklearn/linear_model/_sgd_fast.pyx because it changed. > Compiling sklearn/linear_model/_sag_fast.pyx because it changed. > Compiling sklearn/manifold/_utils.pyx because it changed. > Compiling sklearn/manifold/_barnes_hut_tsne.pyx because it changed. > Compiling sklearn/metrics/_pairwise_fast.pyx because it changed. > Compiling sklearn/metrics/_dist_metrics.pyx because it changed. > Compiling sklearn/metrics/cluster/_expected_mutual_info_fast.pyx because it > changed. > Compiling sklearn/metrics/_pairwise_distances_reduction/_datasets_pair.pyx > because it changed. > Compiling > sklearn/metrics/_pairwise_distances_reduction/_middle_term_computer.pyx > because it changed. > Compiling sklearn/metrics/_pairwise_distances_reduction/_base.pyx because it > changed. > Compiling sklearn/metrics/_pairwise_distances_reduction/_argkmin.pyx because > it changed. > Compiling sklearn/metrics/_pairwise_distances_reduction/_radius_neighbors.pyx > because it changed. > Compiling sklearn/preprocessing/_csr_polynomial_expansion.pyx because it > changed. > Compiling sklearn/neighbors/_ball_tree.pyx because it changed. > Compiling sklearn/neighbors/_kd_tree.pyx because it changed. > Compiling sklearn/neighbors/_partition_nodes.pyx because it changed. > Compiling sklearn/neighbors/_quad_tree.pyx because it changed. > Compiling sklearn/svm/_newrand.pyx because it changed. > Compiling sklearn/svm/_libsvm.pyx because it changed. > Compiling sklearn/svm/_liblinear.pyx because it changed. > Compiling sklearn/svm/_libsvm_sparse.pyx because it changed. > Compiling sklearn/tree/_tree.pyx because it changed. > Compiling sklearn/tree/_splitter.pyx because it changed. > Compiling sklearn/tree/_criterion.pyx because it changed. > Compiling sklearn/tree/_utils.pyx because it changed. > Compiling sklearn/utils/sparsefuncs_fast.pyx because it changed. > Compiling sklearn/utils/_cython_blas.pyx because it changed. > Compiling sklearn/utils/arrayfuncs.pyx because it changed. > Compiling sklearn/utils/murmurhash.pyx because it changed. > Compiling sklearn/utils/_fast_dict.pyx because it changed. > Compiling sklearn/utils/_openmp_helpers.pyx because it changed. > Compiling sklearn/utils/_seq_dataset.pyx because it changed. > Compiling sklearn/utils/_weight_vector.pyx because it changed. > Compiling sklearn/utils/_random.pyx because it changed. > Compiling sklearn/utils/_logistic_sigmoid.pyx because it changed. > Compiling sklearn/utils/_readonly_array_wrapper.pyx because it changed. > Compiling sklearn/utils/_typedefs.pyx because it changed. > Compiling sklearn/utils/_heap.pyx because it changed. > Compiling sklearn/utils/_sorting.pyx because it changed. > Compiling sklearn/utils/_vector_sentinel.pyx because it changed. > Compiling sklearn/utils/_isfinite.pyx because it changed. > [ 3/64] Cythonizing sklearn/_loss/_loss.pyx > [44/64] Cythonizing sklearn/svm/_newrand.pyx > [45/64] Cythonizing sklearn/tree/_criterion.pyx > [57/64] Cythonizing sklearn/utils/_seq_dataset.pyx > [ 8/64] Cythonizing sklearn/cluster/_k_means_lloyd.pyx > [13/64] Cythonizing sklearn/ensemble/_gradient_boosting.pyx > [20/64] Cythonizing sklearn/ensemble/_hist_gradient_boosting/splitting.pyx > [31/64] Cythonizing > sklearn/metrics/_pairwise_distances_reduction/_datasets_pair.pyx > [38/64] Cythonizing sklearn/neighbors/_partition_nodes.pyx > [41/64] Cythonizing sklearn/svm/_liblinear.pyx > [43/64] Cythonizing sklearn/svm/_libsvm_sparse.pyx > [48/64] Cythonizing sklearn/tree/_utils.pyx > [53/64] Cythonizing sklearn/utils/_logistic_sigmoid.pyx > [ 4/64] Cythonizing sklearn/cluster/_dbscan_inner.pyx > [11/64] Cythonizing sklearn/decomposition/_cdnmf_fast.pyx > [17/64] Cythonizing sklearn/ensemble/_hist_gradient_boosting/_predictor.pyx > [26/64] Cythonizing sklearn/manifold/_barnes_hut_tsne.pyx > [32/64] Cythonizing > sklearn/metrics/_pairwise_distances_reduction/_middle_term_computer.pyx > [40/64] Cythonizing sklearn/preprocessing/_csr_polynomial_expansion.pyx > [49/64] Cythonizing sklearn/utils/_cython_blas.pyx > [60/64] Cythonizing sklearn/utils/_vector_sentinel.pyx > [ 5/64] Cythonizing sklearn/cluster/_hierarchical_fast.pyx > [14/64] Cythonizing sklearn/ensemble/_hist_gradient_boosting/_binning.pyx > [21/64] Cythonizing sklearn/ensemble/_hist_gradient_boosting/utils.pyx > [28/64] Cythonizing sklearn/metrics/_dist_metrics.pyx > [46/64] Cythonizing sklearn/tree/_splitter.pyx > [56/64] Cythonizing sklearn/utils/_readonly_array_wrapper.pyx > [ 7/64] Cythonizing sklearn/cluster/_k_means_elkan.pyx > [16/64] Cythonizing > sklearn/ensemble/_hist_gradient_boosting/_gradient_boosting.pyx > [22/64] Cythonizing sklearn/feature_extraction/_hashing_fast.pyx > [25/64] Cythonizing sklearn/linear_model/_sgd_fast.pyx > [33/64] Cythonizing > sklearn/metrics/_pairwise_distances_reduction/_radius_neighbors.pyx > [42/64] Cythonizing sklearn/svm/_libsvm.pyx > [47/64] Cythonizing sklearn/tree/_tree.pyx > [62/64] Cythonizing sklearn/utils/arrayfuncs.pyx > [ 2/64] Cythonizing sklearn/_isotonic.pyx > [12/64] Cythonizing sklearn/decomposition/_online_lda_fast.pyx > [18/64] Cythonizing sklearn/ensemble/_hist_gradient_boosting/common.pyx > [19/64] Cythonizing sklearn/ensemble/_hist_gradient_boosting/histogram.pyx > [30/64] Cythonizing sklearn/metrics/_pairwise_distances_reduction/_base.pyx > [35/64] Cythonizing sklearn/metrics/cluster/_expected_mutual_info_fast.pyx > [37/64] Cythonizing sklearn/neighbors/_kd_tree.pyx > [50/64] Cythonizing sklearn/utils/_fast_dict.pyx > [61/64] Cythonizing sklearn/utils/_weight_vector.pyx > [ 1/64] Cythonizing sklearn/__check_build/_check_build.pyx > [ 9/64] Cythonizing sklearn/cluster/_k_means_minibatch.pyx > [10/64] Cythonizing sklearn/datasets/_svmlight_format_fast.pyx > [24/64] Cythonizing sklearn/linear_model/_sag_fast.pyx > [27/64] Cythonizing sklearn/manifold/_utils.pyx > [29/64] Cythonizing sklearn/metrics/_pairwise_distances_reduction/_argkmin.pyx > [36/64] Cythonizing sklearn/neighbors/_ball_tree.pyx > [51/64] Cythonizing sklearn/utils/_heap.pyx > [54/64] Cythonizing sklearn/utils/_openmp_helpers.pyx > [55/64] Cythonizing sklearn/utils/_random.pyx > [58/64] Cythonizing sklearn/utils/_sorting.pyx > [59/64] Cythonizing sklearn/utils/_typedefs.pyx > [63/64] Cythonizing sklearn/utils/murmurhash.pyx > [ 6/64] Cythonizing sklearn/cluster/_k_means_common.pyx > [15/64] Cythonizing sklearn/ensemble/_hist_gradient_boosting/_bitset.pyx > [23/64] Cythonizing sklearn/linear_model/_cd_fast.pyx > [34/64] Cythonizing sklearn/metrics/_pairwise_fast.pyx > [39/64] Cythonizing sklearn/neighbors/_quad_tree.pyx > [52/64] Cythonizing sklearn/utils/_isfinite.pyx > [64/64] Cythonizing sklearn/utils/sparsefuncs_fast.pyx > running config > mv PKG-INFO-BAK PKG-INFO > # Provide bootstrap links even at build process - otherwise sphinx fails > mkdir -p doc/themes/scikit-learn-modern/static/css/vendor/ > ln -s /usr/share/javascript/bootstrap4/css/bootstrap.min.css > doc/themes/scikit-learn-modern/static/css/vendor/bootstrap.min.css > ln: failed to create symbolic link > 'doc/themes/scikit-learn-modern/static/css/vendor/bootstrap.min.css': File > exists > make[1]: *** [debian/rules:154: override_dh_auto_configure] Error 1 > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > make: *** [debian/rules:124: binary] Error 2 > dpkg-buildpackage: error: debian/rules binary subprocess returned exit status > 2 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -b' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/16/scikit-learn_1.2.1+dfsg-1_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
