Source: sagemath Version: 9.5-6 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-binary-20230816 ftbfs-binary-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to do build a binary-only build (not source) after a successful build (dpkg-buildpackage ; dpkg-buildpackage -b). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/DoubleBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -b > --------------------------------------------------------------------------------------------------------------------- > > dpkg-buildpackage: info: source package sagemath > dpkg-buildpackage: info: source version 9.5-6 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Tobias Hansen <[email protected]> > dpkg-source --before-build . > dpkg-buildpackage: info: host architecture amd64 > dpkg-source: info: using options from sagemath-9.5/debian/source/options: > --extend-diff-ignore=^sage/(m4/sage_spkg_configures.m4|src/doc/en/installation/.*\.txt|build/bin/sage-build-env-config|build/pkgs/sage_conf/src/sage_conf.py|build/pkgs/sage_conf/src/setup.cfg) > debian/rules clean > dh clean --with=python3,sphinxdoc --buildsystem=pybuild > --sourcedir=sage/pkgs/sagemath-standard > dh_autoreconf_clean -O--buildsystem=pybuild > -O--sourcedir=sage/pkgs/sagemath-standard > debian/rules override_dh_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > rm -rf .sage .texlive2021 debian/python3-sage-dbg > rm -f sage/pkgs/sagemath-standard/sage_conf.py > dh_clean > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > debian/rules binary > dh binary --with=python3,sphinxdoc --buildsystem=pybuild > --sourcedir=sage/pkgs/sagemath-standard > debian/rules install > make[1]: Entering directory '/<<PKGBUILDDIR>>' > dh install --with=python3,sphinxdoc --buildsystem=pybuild > --sourcedir=sage/pkgs/sagemath-standard > debian/rules build > make[2]: Entering directory '/<<PKGBUILDDIR>>' > dh build --with=python3,sphinxdoc --buildsystem=pybuild > --sourcedir=sage/pkgs/sagemath-standard > dh_update_autotools_config -O--buildsystem=pybuild > -O--sourcedir=sage/pkgs/sagemath-standard > dh_autoreconf -O--buildsystem=pybuild > -O--sourcedir=sage/pkgs/sagemath-standard > debian/rules override_dh_auto_configure > make[3]: Entering directory '/<<PKGBUILDDIR>>' > cd sage/pkgs/sage-setup && python3 setup.py build > running build > running build_py > cd sage/pkgs/sage-setup && python3 setup.py install > --root=/<<PKGBUILDDIR>>/debian/tmp0 --install-layout=deb > running install > /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: > SetuptoolsDeprecationWarning: setup.py install is deprecated. > !! > > > ******************************************************************************** > Please avoid running ``setup.py`` directly. > Instead, use pypa/build, pypa/installer or other > standards-based tools. > > See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html > for details. > > ******************************************************************************** > > !! > self.initialize_options() > running build > running build_py > running install_lib > running install_egg_info > running egg_info > writing sage_setup.egg-info/PKG-INFO > writing dependency_links to sage_setup.egg-info/dependency_links.txt > writing requirements to sage_setup.egg-info/requires.txt > writing top-level names to sage_setup.egg-info/top_level.txt > reading manifest file 'sage_setup.egg-info/SOURCES.txt' > writing manifest file 'sage_setup.egg-info/SOURCES.txt' > removing > '/<<PKGBUILDDIR>>/debian/tmp0/usr/lib/python3/dist-packages/sage_setup-9.5.egg-info' > (and everything under it) > Copying sage_setup.egg-info to > /<<PKGBUILDDIR>>/debian/tmp0/usr/lib/python3/dist-packages/sage_setup-9.5.egg-info > Skipping SOURCES.txt > running install_scripts > export PYTHONPATH=/<<PKGBUILDDIR>>/debian/tmp0/usr/lib/python3/dist-packages > && dh_auto_configure > I: pybuild base:291: python3.11 setup.py config > /bin/sh: 1: --version: not found > distributions = [''] > Discovering Python/Cython source code.... > Discovered Python/Cython sources, time: 0.20 seconds. > running config > I: pybuild base:291: python3.11-dbg setup.py config > /bin/sh: 1: --version: not found > distributions = [''] > Discovering Python/Cython source code.... > Discovered Python/Cython sources, time: 0.50 seconds. > running config > make[3]: Leaving directory '/<<PKGBUILDDIR>>' > debian/rules override_dh_auto_build-arch > make[3]: Entering directory '/<<PKGBUILDDIR>>' > cp -f debian/sage_conf.py sage/pkgs/sagemath-standard/ > cd sage/build/pkgs/sagelib && SAGE_ROOT=/<<PKGBUILDDIR>>/sage > PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/<<PKGBUILDDIR>>/sage/build/bin > ./bootstrap > sed -i '/sage-conf/d' sage/src/setup.cfg > export PYTHONPATH=/<<PKGBUILDDIR>>/debian/tmp0/usr/lib/python3/dist-packages > && dh_auto_build > I: pybuild base:291: /usr/bin/python3 setup.py build > /bin/sh: 1: --version: not found > distributions = [''] > Discovering Python/Cython source code.... > Discovered Python/Cython sources, time: 0.20 seconds. > running build > Generating auto-generated sources > Building interpreters for fast_callable > running build_cython > Enabling Cython debugging support > INFO: Disabling color, you really want to install colorlog. > Disabling color, you really want to install colorlog. > /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the > future `np.bool` will be defined as the corresponding NumPy scalar. > if not hasattr(numpy, method): > /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the > future `np.bytes` will be defined as the corresponding NumPy scalar. > obj = getattr(themodule, elem) > Executing 0 commands (using 1 thread) > Time to execute 0 commands: 0.05 seconds. > Total time spent compiling C/C++ extensions: 0.11 seconds. > I: pybuild base:291: /usr/bin/python3-dbg setup.py build > /bin/sh: 1: --version: not found > distributions = [''] > Discovering Python/Cython source code.... > Discovered Python/Cython sources, time: 0.52 seconds. > running build > Generating auto-generated sources > Building interpreters for fast_callable > running build_cython > Enabling Cython debugging support > /<<PKGBUILDDIR>>/debian/tmp0/usr/lib/python3/dist-packages/sage_setup/command/sage_build_cython.py:163: > ResourceWarning: unclosed file <_io.TextIOWrapper > name='build/cythonized/.cython_version' mode='r' encoding='UTF-8'> > if open(self._version_file).read() == self._version_stamp: > ResourceWarning: Enable tracemalloc to get the object allocation traceback > INFO: Disabling color, you really want to install colorlog. > Disabling color, you really want to install colorlog. > /usr/lib/python3/dist-packages/pythran/config.py:8: DeprecationWarning: > > `numpy.distutils` is deprecated since NumPy 1.23.0, as a result > of the deprecation of `distutils` itself. It will be removed for > Python >= 3.12. For older Python versions it will remain present. > It is recommended to use `setuptools < 60.0` for those Python versions. > For more details, see: > https://numpy.org/devdocs/reference/distutils_status_migration.html > > > import numpy.distutils.system_info as numpy_sys > /usr/lib/python3/dist-packages/setuptools/_distutils/msvccompiler.py:66: > DeprecationWarning: msvccompiler is deprecated and slated to be removed in > the future. Please discontinue use or file an issue with pypa/distutils > describing your use case. > warnings.warn( > /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the > future `np.bool` will be defined as the corresponding NumPy scalar. > if not hasattr(numpy, method): > /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the > future `np.bytes` will be defined as the corresponding NumPy scalar. > obj = getattr(themodule, elem) > /usr/lib/python3/dist-packages/setuptools/sandbox.py:13: DeprecationWarning: > pkg_resources is deprecated as an API. See > https://setuptools.pypa.io/en/latest/pkg_resources.html > import pkg_resources > /usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: > DeprecationWarning: Deprecated call to > `pkg_resources.declare_namespace('mpl_toolkits')`. > Implementing implicit namespace packages (as specified in PEP 420) is > preferred to `pkg_resources.declare_namespace`. See > https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages > declare_namespace(pkg) > Executing 0 commands (using 1 thread) > Time to execute 0 commands: 0.06 seconds. > Total time spent compiling C/C++ extensions: 0.28 seconds. > export PYTHONPATH=/<<PKGBUILDDIR>>/debian/tmp0/usr/lib/python3/dist-packages > && dh_auto_install > I: pybuild base:291: /usr/bin/python3 setup.py install --root > /<<PKGBUILDDIR>>/debian/python3-sage > /bin/sh: 1: --version: not found > distributions = [''] > Discovering Python/Cython source code.... > Discovered Python/Cython sources, time: 0.22 seconds. > running install > running build > Generating auto-generated sources > Building interpreters for fast_callable > running build_cython > Enabling Cython debugging support > INFO: Disabling color, you really want to install colorlog. > Disabling color, you really want to install colorlog. > /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the > future `np.bool` will be defined as the corresponding NumPy scalar. > if not hasattr(numpy, method): > /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the > future `np.bytes` will be defined as the corresponding NumPy scalar. > obj = getattr(themodule, elem) > Executing 0 commands (using 1 thread) > Time to execute 0 commands: 0.03 seconds. > Total time spent compiling C/C++ extensions: 0.09 seconds. > warning: no files found matching '*.hh' anywhere in distribution > warning: no files found matching '*.inc' anywhere in distribution > no previously-included directories found matching '.tox' > warning: no directories found matching 'sage/libs/gap/test' > no previously-included directories found matching 'sage_setup' > I: pybuild base:291: /usr/bin/python3-dbg setup.py install --root > /<<PKGBUILDDIR>>/debian/python3-sage-dbg > /bin/sh: 1: --version: not found > distributions = [''] > Discovering Python/Cython source code.... > Discovered Python/Cython sources, time: 0.56 seconds. > running install > /usr/lib/python3/dist-packages/setuptools/_distutils/util.py:230: > DeprecationWarning: shell/Perl-style substitutions are deprecated > warnings.warn( > running build > Generating auto-generated sources > Building interpreters for fast_callable > running build_cython > Enabling Cython debugging support > /<<PKGBUILDDIR>>/debian/tmp0/usr/lib/python3/dist-packages/sage_setup/command/sage_build_cython.py:163: > ResourceWarning: unclosed file <_io.TextIOWrapper > name='build/cythonized/.cython_version' mode='r' encoding='UTF-8'> > if open(self._version_file).read() == self._version_stamp: > ResourceWarning: Enable tracemalloc to get the object allocation traceback > INFO: Disabling color, you really want to install colorlog. > Disabling color, you really want to install colorlog. > /usr/lib/python3/dist-packages/pythran/config.py:8: DeprecationWarning: > > `numpy.distutils` is deprecated since NumPy 1.23.0, as a result > of the deprecation of `distutils` itself. It will be removed for > Python >= 3.12. For older Python versions it will remain present. > It is recommended to use `setuptools < 60.0` for those Python versions. > For more details, see: > https://numpy.org/devdocs/reference/distutils_status_migration.html > > > import numpy.distutils.system_info as numpy_sys > /usr/lib/python3/dist-packages/setuptools/_distutils/msvccompiler.py:66: > DeprecationWarning: msvccompiler is deprecated and slated to be removed in > the future. Please discontinue use or file an issue with pypa/distutils > describing your use case. > warnings.warn( > /usr/lib/python3/dist-packages/pythran/tables.py:4530: FutureWarning: In the > future `np.bool` will be defined as the corresponding NumPy scalar. > if not hasattr(numpy, method): > /usr/lib/python3/dist-packages/pythran/tables.py:4563: FutureWarning: In the > future `np.bytes` will be defined as the corresponding NumPy scalar. > obj = getattr(themodule, elem) > /usr/lib/python3/dist-packages/setuptools/sandbox.py:13: DeprecationWarning: > pkg_resources is deprecated as an API. See > https://setuptools.pypa.io/en/latest/pkg_resources.html > import pkg_resources > /usr/lib/python3/dist-packages/pkg_resources/__init__.py:2871: > DeprecationWarning: Deprecated call to > `pkg_resources.declare_namespace('mpl_toolkits')`. > Implementing implicit namespace packages (as specified in PEP 420) is > preferred to `pkg_resources.declare_namespace`. See > https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages > declare_namespace(pkg) > Executing 0 commands (using 1 thread) > Time to execute 0 commands: 0.05 seconds. > Total time spent compiling C/C++ extensions: 0.23 seconds. > warning: no files found matching '*.hh' anywhere in distribution > warning: no files found matching '*.inc' anywhere in distribution > no previously-included directories found matching '.tox' > warning: no directories found matching 'sage/libs/gap/test' > no previously-included directories found matching 'sage_setup' > mkdir -p debian/tmp > mv debian/python3-sage/usr debian/tmp/ > rm -rf debian/python3-sage > mkdir -p debian/tmp/usr/lib/python3.11/dist-packages/ > cp -f debian/sage_conf.py debian/tmp/usr/lib/python3.11/dist-packages/ > dh override_dh_auto_build-arch --with=python3,sphinxdoc --buildsystem=pybuild > --sourcedir=sage/pkgs/sagemath-standard > make[3]: Leaving directory '/<<PKGBUILDDIR>>' > debian/rules override_dh_auto_build-indep > make[3]: Entering directory '/<<PKGBUILDDIR>>' > cd sage && SAGE_ROOT=/<<PKGBUILDDIR>>/sage > PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/<<PKGBUILDDIR>>/sage/build/bin > src/doc/bootstrap > mv sage/src/sage sage/src/sage.bak # Use the installed sage, not the one from > the source tree > cd sage/src && \ > export > PYTHONPATH=/<<PKGBUILDDIR>>/debian/tmp/usr/lib/python3.11/dist-packages \ > SAGE_SRC=/<<PKGBUILDDIR>>/sage/src \ > SAGE_DOC_SRC=/<<PKGBUILDDIR>>/sage/src/doc \ > SAGE_DOC=/<<PKGBUILDDIR>>/sage/src/doc \ > MATHJAX_DIR=/usr/share/javascript/mathjax \ > LANG=C && \ > python3 -m sage_docbuild --no-pdf-links --mathjax all html > /<<PKGBUILDDIR>>/sage/src/sage_docbuild/__init__.py:1728: DeprecationWarning: > avoid using "sage --docbuild all html" and "sage --docbuild all pdf"; use > "make doc" and "make doc-pdf" instead, if available. > See https://trac.sagemath.org/31948 for details. > builder = getattr(get_builder(name), typ) > > Building reference manual, first pass. > > [reference] updating environment: [config changed > ('autodoc_builtin_argspec')] 1 added, 0 changed, 0 removed > [reference] The inventory files are in doc/inventory/en/reference/references. > Build finished. The built documents can be found in > /<<PKGBUILDDIR>>/sage/src/doc/inventory/en/reference/references > 0.00s - Debugger warning: It seems that frozen modules are being used, which > may > 0.00s - make the debugger miss breakpoints. Please pass -Xfrozen_modules=off > 0.00s - to python to disable frozen modules. > 0.00s - Note: Debugging will proceed. Set PYDEVD_DISABLE_FILE_VALIDATION=1 to > disable this validation. > [repl ] updating environment: [config changed > ('autodoc_builtin_argspec')] 36 added, 0 changed, 0 removed > [tensor_fr] updating environment: [config changed > ('autodoc_builtin_argspec')] 19 added, 0 changed, 0 removed > [spkg ] building [inventory]: targets for 355 source files that are out > of date > [spkg ] updating environment: [config changed > ('autodoc_builtin_argspec')] 355 added, 0 changed, 0 removed > [dynamics ] updating environment: [config changed > ('autodoc_builtin_argspec')] 16 added, 0 changed, 0 removed > [polynomia] updating environment: [config changed > ('autodoc_builtin_argspec')] 62 added, 0 changed, 0 removed > [algebras ] updating environment: [config changed > ('autodoc_builtin_argspec')] 99 added, 0 changed, 0 removed > [manifolds] updating environment: [config changed > ('autodoc_builtin_argspec')] 84 added, 0 changed, 0 removed > [tensor_fr] The inventory files are in > doc/inventory/en/reference/tensor_free_modules. > Build finished. The built documents can be found in > /<<PKGBUILDDIR>>/sage/src/doc/inventory/en/reference/tensor_free_modules > [repl ] The inventory files are in doc/inventory/en/reference/repl. > Build finished. The built documents can be found in > /<<PKGBUILDDIR>>/sage/src/doc/inventory/en/reference/repl > [spkg ] > /<<PKGBUILDDIR>>/sage/src/doc/en/reference/spkg/index_alph.rst:362: WARNING: > Explicit markup ends without a blank line; unexpected unindent. > [plot3d ] updating environment: [config changed > ('autodoc_builtin_argspec')] 20 added, 0 changed, 0 removed > [arithgrou] updating environment: [config changed > ('autodoc_builtin_argspec')] 12 added, 0 changed, 0 removed > [combinat ] updating environment: [config changed > ('autodoc_builtin_argspec')] 369 added, 0 changed, 0 removed > [dynamics ] The inventory files are in doc/inventory/en/reference/dynamics. > Build finished. The built documents can be found in > /<<PKGBUILDDIR>>/sage/src/doc/inventory/en/reference/dynamics > [arithgrou] The inventory files are in doc/inventory/en/reference/arithgroup. > Build finished. The built documents can be found in > /<<PKGBUILDDIR>>/sage/src/doc/inventory/en/reference/arithgroup > [spkg ] The inventory files are in doc/inventory/en/reference/spkg. > Error building the documentation. > Traceback (most recent call last): > File "<frozen runpy>", line 198, in _run_module_as_main > File "<frozen runpy>", line 88, in _run_code > File "/<<PKGBUILDDIR>>/sage/src/sage_docbuild/__main__.py", line 2, in > <module> > main() > File "/<<PKGBUILDDIR>>/sage/src/sage_docbuild/__init__.py", line 1729, in > main > builder() > File "/<<PKGBUILDDIR>>/sage/src/sage_docbuild/__init__.py", line 348, in > _wrapper > getattr(get_builder(document), 'inventory')(*args, **kwds) > File "/<<PKGBUILDDIR>>/sage/src/sage_docbuild/__init__.py", line 537, in > _wrapper > self._build_everything_except_bibliography(format, *args, **kwds) > File "/<<PKGBUILDDIR>>/sage/src/sage_docbuild/__init__.py", line 521, in > _build_everything_except_bibliography > build_many(build_ref_doc, non_references) > File "/<<PKGBUILDDIR>>/sage/src/sage_docbuild/__init__.py", line 299, in > build_many > _build_many(target, args, processes=processes) > File "/<<PKGBUILDDIR>>/sage/src/sage_docbuild/utils.py", line 289, in > build_many > raise worker_exc.original_exception > OSError: /<<PKGBUILDDIR>>/sage/src/doc/en/reference/spkg/index_alph.rst:362: > WARNING: Explicit markup ends without a blank line; unexpected unindent. > > Note: incremental documentation builds sometimes cause spurious > error messages. To be certain that these are real errors, run > "make doc-clean doc-uninstall" first and try again. > make[3]: *** [debian/rules:84: override_dh_auto_build-indep] Error 1 > make[3]: Leaving directory '/<<PKGBUILDDIR>>' > make[2]: *** [debian/rules:39: build] Error 2 > make[2]: Leaving directory '/<<PKGBUILDDIR>>' > make[1]: *** [debian/rules:39: install] Error 2 > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > make: *** [debian/rules:39: binary] Error 2 > dpkg-buildpackage: error: debian/rules binary subprocess returned exit status > 2 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -b' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/16/sagemath_9.5-6_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
