Source: lammps Version: 20220106.git7586adbb6a+ds1-2 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-binary-20230816 ftbfs-binary-after-build User: [email protected] Usertags: qa-doublebuild
Hi, This package fails to do build a binary-only build (not source) after a successful build (dpkg-buildpackage ; dpkg-buildpackage -b). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/DoubleBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env > -us -uc -rfakeroot -b > ---------------------------------------------------------------------------------------------------------------------------------------- > > dpkg-buildpackage: info: source package lammps > dpkg-buildpackage: info: source version 20220106.git7586adbb6a+ds1-2 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Anton Gladky <[email protected]> > dpkg-source --before-build . > dpkg-buildpackage: info: host architecture amd64 > fakeroot debian/rules clean > dh clean --with python3 --with-sphinxdoc --sourcedirectory=cmake > --builddirectory=/<<PKGBUILDDIR>>/debian/build > debian/rules override_dh_auto_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > dh_auto_clean > rm -rf /<<PKGBUILDDIR>>/debian/build > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_autoreconf_clean -O--with-sphinxdoc -O--sourcedirectory=cmake > -O--builddirectory=/<<BUILDDIR>>/lammps-20220106.git7586adbb6a\+ds1/debian/build > dh_clean -O--with-sphinxdoc -O--sourcedirectory=cmake > -O--builddirectory=/<<BUILDDIR>>/lammps-20220106.git7586adbb6a\+ds1/debian/build > debian/rules build > dh build --with python3 --with-sphinxdoc --sourcedirectory=cmake > --builddirectory=/<<PKGBUILDDIR>>/debian/build > dh_update_autotools_config -O--with-sphinxdoc -O--sourcedirectory=cmake > -O--builddirectory=/<<BUILDDIR>>/lammps-20220106.git7586adbb6a\+ds1/debian/build > dh_autoreconf -O--with-sphinxdoc -O--sourcedirectory=cmake > -O--builddirectory=/<<BUILDDIR>>/lammps-20220106.git7586adbb6a\+ds1/debian/build > debian/rules override_dh_auto_configure > make[1]: Entering directory '/<<PKGBUILDDIR>>' > dh_auto_configure -- \ > -DBUILD_SHARED_LIBS=ON \ > -DCMAKE_SKIP_INSTALL_RPATH=TRUE \ > -DPKG_ASPHERE=ON \ > -DPKG_BODY=ON \ > -DPKG_CLASS2=ON \ > -DPKG_COLLOID=ON \ > -DPKG_COMPRESS=ON \ > -DPKG_CORESHELL=ON \ > -DPKG_EXTRA-PAIR=ON \ > -DPKG_DIPOLE=ON \ > -DPKG_GPU=OFF \ > -DPKG_GRANULAR=ON \ > -DPKG_KIM=ON \ > -DPKG_KSPACE=ON \ > -DPKG_MANYBODY=ON \ > -DPKG_MC=ON \ > -DPKG_MISC=ON \ > -DPKG_MOLECULE=ON \ > -DPKG_MPIIO=ON \ > -DPKG_OPT=ON \ > -DPKG_PERI=ON \ > -DPKG_POEMS=ON \ > -DPKG_PYTHON=ON \ > -DPKG_QEQ=ON \ > -DPKG_REPLICA=ON \ > -DPKG_RIGID=ON \ > -DPKG_SHOCK=ON \ > -DPKG_SNAP=ON \ > -DPKG_SRD=ON \ > -DPKG_USER-ATC=ON \ > -DPKG_USER-AWPMD=ON \ > -DPKG_USER-BOCS=ON \ > -DPKG_USER-CGDNA=ON \ > -DPKG_USER-CGSDK=ON \ > -DPKG_USER-DIFFRACTION=ON \ > -DPKG_USER-DPD=ON \ > -DPKG_USER-DRUDE=ON \ > -DPKG_USER-EFF=ON \ > -DPKG_USER-FEP=ON \ > -DPKG_USER-H5MD=ON \ > -DPKG_USER-LB=ON \ > -DPKG_USER-MANIFOLD=ON \ > -DPKG_USER-MEAMC=ON \ > -DPKG_USER-MGPT=ON \ > -DPKG_USER-MISC=ON \ > -DPKG_USER-MOFFF=ON \ > -DPKG_USER-MOLFILE=ON \ > -DPKG_USER-NETCDF=ON \ > -DPKG_USER-OMP=ON \ > -DPKG_USER-PHONON=ON \ > -DPKG_USER-QTB=ON \ > -DPKG_USER-REAXC=OFF \ > -DPKG_USER-SMD=ON \ > -DPKG_USER-SMTBQ=ON \ > -DPKG_USER-SPH=ON \ > -DPKG_USER-TALLY=ON \ > -DPKG_USER-UEF=ON \ > -DPKG_USER-VTK=ON \ > -DPKG_VORONOI=ON > cd debian/build && cmake -DCMAKE_INSTALL_PREFIX=/usr > -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc > -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON > -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF > -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON > -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run > -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" > -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu > -DBUILD_SHARED_LIBS=ON -DCMAKE_SKIP_INSTALL_RPATH=TRUE -DPKG_ASPHERE=ON > -DPKG_BODY=ON -DPKG_CLASS2=ON -DPKG_COLLOID=ON -DPKG_COMPRESS=ON > -DPKG_CORESHELL=ON -DPKG_EXTRA-PAIR=ON -DPKG_DIPOLE=ON -DPKG_GPU=OFF > -DPKG_GRANULAR=ON -DPKG_KIM=ON -DPKG_KSPACE=ON -DPKG_MANYBODY=ON -DPKG_MC=ON > -DPKG_MISC=ON -DPKG_MOLECULE=ON -DPKG_MPIIO=ON -DPKG_OPT=ON > -DPKG_PERI=ON -DPKG_POEMS=ON -DPKG_PYTHON=ON -DPKG_QEQ=ON -DPKG_REPLICA=ON > -DPKG_RIGID=ON -DPKG_SHOCK=ON -DPKG_SNAP=ON -DPKG_SRD=ON -DPKG_USER-ATC=ON > -DPKG_USER-AWPMD=ON -DPKG_USER-BOCS=ON -DPKG_USER-CGDNA=ON > -DPKG_USER-CGSDK=ON -DPKG_USER-DIFFRACTION=ON -DPKG_USER-DPD=ON > -DPKG_USER-DRUDE=ON -DPKG_USER-EFF=ON -DPKG_USER-FEP=ON -DPKG_USER-H5MD=ON > -DPKG_USER-LB=ON -DPKG_USER-MANIFOLD=ON -DPKG_USER-MEAMC=ON > -DPKG_USER-MGPT=ON -DPKG_USER-MISC=ON -DPKG_USER-MOFFF=ON > -DPKG_USER-MOLFILE=ON -DPKG_USER-NETCDF=ON -DPKG_USER-OMP=ON > -DPKG_USER-PHONON=ON -DPKG_USER-QTB=ON -DPKG_USER-REAXC=OFF -DPKG_USER-SMD=ON > -DPKG_USER-SMTBQ=ON -DPKG_USER-SPH=ON -DPKG_USER-TALLY=ON -DPKG_USER-UEF=ON > -DPKG_USER-VTK=ON -DPKG_VORONOI=ON ../../cmake > CMake Deprecation Warning at CMakeLists.txt:13 (cmake_policy): > The OLD behavior for policy CMP0109 will be removed from a future version > of CMake. > > The cmake-policies(7) manual explains that the OLD behaviors of all > policies are deprecated and that a policy should be set to OLD only under > specific short-term circumstances. Projects should be ported to the NEW > behavior and not rely on setting a policy to OLD. > > > -- The CXX compiler identification is GNU 13.2.0 > -- Detecting CXX compiler ABI info > -- Detecting CXX compiler ABI info - done > -- Check for working CXX compiler: /usr/bin/c++ - skipped > -- Detecting CXX compile features > -- Detecting CXX compile features - done > -- Found Git: /usr/bin/git (found version "2.40.1") > -- Running check for auto-generated files from make-based build system > -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found > version "3.1") > -- Found MPI: TRUE (found version "3.1") > -- Looking for C++ include omp.h > -- Looking for C++ include omp.h - found > -- Found OpenMP_CXX: -fopenmp (found version "4.5") > -- Found OpenMP: TRUE (found version "4.5") > -- Found JPEG: /usr/lib/x86_64-linux-gnu/libjpeg.so (found version "62") > -- Found PNG: /usr/lib/x86_64-linux-gnu/libpng.so (found version "1.6.40") > -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.13") > -- Found GZIP: /bin/gzip > -- Could NOT find FFMPEG (missing: FFMPEG_EXECUTABLE) > -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") > -- Checking for module 'fftw3' > -- Found fftw3, version 3.3.10 > -- Found FFTW3: /usr/lib/x86_64-linux-gnu/libfftw3.so > -- Found Python: /usr/include/python3.11 (found version "3.11.4") found > components: Development Development.Module Development.Embed > -- Found VORO: /usr/lib/x86_64-linux-gnu/libvoro++.so > -- Found CURL: /usr/lib/x86_64-linux-gnu/libcurl.so (found version "8.2.1") > -- Found KIM-API: /usr/lib/x86_64-linux-gnu/libkim-api.so.2.3.0 > -- Checking for module 'libzstd>=1.4' > -- Found libzstd, version 1.5.5 > -- Looking for C++ include cmath > -- Looking for C++ include cmath - found > -- Generating style headers... > -- Generating package headers... > -- Generating lmpinstalledpkgs.h... > -- Found Python: /usr/bin/python3 (found version "3.11.4") found components: > Interpreter > -- Could NOT find ClangFormat (missing: ClangFormat_EXECUTABLE) (Required is > at least version "8.0") > -- The following tools and libraries have been found and configured: > * Git > * MPI > * OpenMP > * JPEG > * PNG > * FFTW3 > * VORO > * CURL > * KIM-API (required version >= 2.2.0) > * ZLIB > * PkgConfig > * Python > > -- <<< Build configuration >>> > Operating System: Linux Debian GNU/Linux > Build type: None > Install path: /usr > Generator: Unix Makefiles using /usr/bin/gmake > -- Enabled packages: > ASPHERE;BODY;CLASS2;COLLOID;COMPRESS;CORESHELL;DIPOLE;EXTRA-PAIR;GRANULAR;KIM;KSPACE;MANYBODY;MC;MISC;MOLECULE;MPIIO;OPT;PERI;POEMS;PYTHON;QEQ;REPLICA;RIGID;SHOCK;SRD;VORONOI > -- <<< Compilers and Flags: >>> > -- C++ Compiler: /usr/bin/c++ > Type: GNU > Version: 13.2.0 > C++ Flags: -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time > -D_FORTIFY_SOURCE=2 > Defines: > LAMMPS_SMALLBIG;LAMMPS_MEMALIGN=64;LAMMPS_OMP_COMPAT=4;LAMMPS_JPEG;LAMMPS_PNG;LAMMPS_GZIP;FFT_FFTW3;FFT_FFTW_THREADS;LMP_PYTHON;LMP_KIM_CURL;LAMMPS_ZSTD;LMP_MPIIO > -- <<< Linker flags: >>> > -- Executable name: lmp > -- Executable linker flags: -Wl,-z,relro > -- Shared library flags: -Wl,-z,relro > -- <<< MPI flags >>> > -- MPI_defines: MPICH_SKIP_MPICXX;OMPI_SKIP_MPICXX;_MPICC_H > -- MPI includes: > /usr/lib/x86_64-linux-gnu/openmpi/include;/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi > -- MPI libraries: > /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so;/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so; > -- <<< FFT settings >>> > -- Primary FFT lib: FFTW3 > -- Using double precision FFTs > -- Using threaded FFTs > -- Configuring done (8.3s) > -- Generating done (0.2s) > CMake Warning: > Manually-specified variables were not used by the project: > > CMAKE_EXPORT_NO_PACKAGE_REGISTRY > CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY > FETCHCONTENT_FULLY_DISCONNECTED > PKG_SNAP > PKG_USER-ATC > PKG_USER-AWPMD > PKG_USER-BOCS > PKG_USER-CGDNA > PKG_USER-CGSDK > PKG_USER-DIFFRACTION > PKG_USER-DPD > PKG_USER-DRUDE > PKG_USER-EFF > PKG_USER-FEP > PKG_USER-H5MD > PKG_USER-LB > PKG_USER-MANIFOLD > PKG_USER-MEAMC > PKG_USER-MGPT > PKG_USER-MISC > PKG_USER-MOFFF > PKG_USER-MOLFILE > PKG_USER-NETCDF > PKG_USER-OMP > PKG_USER-PHONON > PKG_USER-QTB > PKG_USER-REAXC > PKG_USER-SMD > PKG_USER-SMTBQ > PKG_USER-SPH > PKG_USER-TALLY > PKG_USER-UEF > PKG_USER-VTK > > > -- Build files have been written to: /<<PKGBUILDDIR>>/debian/build > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > debian/rules override_dh_auto_build-indep > make[1]: Entering directory '/<<PKGBUILDDIR>>' > cd /<<PKGBUILDDIR>>/doc && mkdir html && /usr/bin/make html > mkdir: cannot create directory âhtmlâ: File exists > make[1]: *** [debian/rules:75: override_dh_auto_build-indep] Error 1 > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > make: *** [debian/rules:10: build] Error 2 > dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage > --sanitize-env -us -uc -rfakeroot -b' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/16/lammps_20220106.git7586adbb6a+ds1-2_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
