Package: khmer Followup-For: Bug #1055687 User: ubuntu-de...@lists.ubuntu.com Usertags: origin-ubuntu noble ubuntu-patch Control: tags -1 patch
Dear Maintainer, In Ubuntu, the attached patch was applied to achieve the following: * Fix build against Python 3.12 (LP: #2044383). Thanks for considering the patch. -- System Information: Debian Release: trixie/sid APT prefers mantic-updates APT policy: (500, 'mantic-updates'), (500, 'mantic-security'), (500, 'mantic') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 6.1.0-16-generic (SMP w/8 CPU threads; PREEMPT) Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled
diff -Nru khmer-3.0.0~a3+dfsg/debian/patches/python3.12-support.patch khmer-3.0.0~a3+dfsg/debian/patches/python3.12-support.patch --- khmer-3.0.0~a3+dfsg/debian/patches/python3.12-support.patch 1970-01-01 01:00:00.000000000 +0100 +++ khmer-3.0.0~a3+dfsg/debian/patches/python3.12-support.patch 2023-11-23 15:24:51.000000000 +0100 @@ -0,0 +1,24 @@ +Description: Add support for Python 3.12 + Ever since Python 3.2, configparser.SafeConfigParser has been deprecated in + favor of configparser.ConfigParser. An alias existed for backward compability + but the alias was dropped from Python 3.12. +Author: Olivier Gayot <olivier.ga...@canonical.com> +Bug-Ubuntu: https://launchpad.net/bugs/2044383 +Bug-Debian: https://bugs.debian.org/1055687 +Forwarded: https://github.com/dib-lab/khmer/pull/1922 +Last-Update: 2023-11-23 +--- +This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ +Index: khmer-3.0.0~a3+dfsg/versioneer.py +=================================================================== +--- khmer-3.0.0~a3+dfsg.orig/versioneer.py 2019-03-13 14:42:12.000000000 +0100 ++++ khmer-3.0.0~a3+dfsg/versioneer.py 2023-11-23 15:19:50.025827413 +0100 +@@ -339,7 +339,7 @@ + # configparser.NoOptionError (if it lacks "VCS="). See the docstring at + # the top of versioneer.py for instructions on writing your setup.cfg . + setup_cfg = os.path.join(root, "setup.cfg") +- parser = configparser.SafeConfigParser() ++ parser = configparser.ConfigParser() + with open(setup_cfg, "r") as f: + parser.readfp(f) + VCS = parser.get("versioneer", "VCS") # mandatory diff -Nru khmer-3.0.0~a3+dfsg/debian/patches/series khmer-3.0.0~a3+dfsg/debian/patches/series --- khmer-3.0.0~a3+dfsg/debian/patches/series 2023-09-09 08:30:33.000000000 +0200 +++ khmer-3.0.0~a3+dfsg/debian/patches/series 2023-11-23 15:19:31.000000000 +0100 @@ -17,3 +17,4 @@ stringio-buffer.patch refresh_cython find_object_files_at_right_loc.patch +python3.12-support.patch
