Control: reassign -1 snippy Control: retitle -1 Wrong calls of snpEff Control: tags -1 upsteam Control: forwarded -1 https://github.com/pcingola/SnpEff/issues/510
Thanks to snpEff upstream I've found a solution[1] for the problem reported above. I've also added a conscise test case[2] which was exposing the problem above (which is solved) but in a later call to snpEff with a different command a new problem occures. I have reported this to snpEff[3] since I hope to get quick help there for another patch to snippy to simply get rid of some single line in some output file. If all fails we can remove this manuall inside the snippy Perl code but I'm striving for a clean solution here. Kind regards Andreas. [1] https://salsa.debian.org/med-team/snippy/-/blob/master/debian/patches/snpeff_v5.1%2B.patch [2] https://salsa.debian.org/med-team/snippy/-/blob/master/debian/tests/test_for_working_snpeff_v5.1%2B [3] https://github.com/pcingola/SnpEff/issues/510 -- http://fam-tille.de