Control: tags -1 confirmed On Mon 22 Jan 2024 09:22:49 AM -05, Matthias Klose <d...@debian.org> wrote:
Package: src:macaulay2 Version: 1.22+ds-5 Severity: serious Tags: sid trixie ftbfs User: debian-pyt...@lists.debian.org Usertags: python3.12with python3-defaults from experimental: [...] gcc -std=gnu11 -g -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/macaulay2-1.22+ds-5build1 -g3 -O2 -Wno-unused -pipe -Wall -Wno-shadow -Wcast-qual -Wno-sign-conversion -Wno-sign-compare -Wno-parentheses -Wno-sign-compare -Wuninitialized -Wframe-address -Wstrict-aliasing -Wfatal-errors -Wimplicit-function-declaration -Wno-unused-label -Wreturn-type -Wunused-function -Wfatal-errors -I. -I. -I./../e -I./../system -I./../../include -I./../c -I/<<PKGBUILDDIR>>/M2/include -I/<<PKGBUILDDIR>>/M2/include -I/<<PKGBUILDDIR>>/M2/usr-host/include -I/<<PKGBUILDDIR>>/M2/include -I/<<PKGBUILDDIR>>/M2/include -I/<<PKGBUILDDIR>>/M2/usr-host/include -I/<<PKGBUILDDIR>>/M2/include -I/<<PKGBUILDDIR>>/M2/include -I/<<PKGBUILDDIR>>/M2/usr-host/include -Wdate-time -D_FORTIFY_SOURCE=3 -isystem /usr/include/libxml2 -I/usr/include/x86_64-linux-gnu/singular -I/usr/include/singular -DSING_NDEBUG -DOM_NDEBUG -I/usr/src/gtest -Wdate-time -D_FORTIFY_SOURCE=3 -DNDEBUG -I/usr/include/cddlib -I/usr/include/cdd -I/usr/include/eigen3 -I/usr/include/python3.12 -I/usr/include -DBOOST_STACKTRACE_LINK -isystem /usr/include/libxml2 -I/usr/include/x86_64-linux-gnu/singular -I/usr/include/singular -DSING_NDEBUG -DOM_NDEBUG -I/usr/src/gtest -Wdate-time-D_FORTIFY_SOURCE=3 -DNDEBUG -I/usr/include/cddlib -I/usr/include/cdd -I/usr/include/eigen3 -I/usr/include/python3.12-I/usr/include -DBOOST_STACKTRACE_LINK -isystem /usr/include/libxml2 -I/usr/include/x86_64-linux-gnu/singular -I/usr/include/singular -DSING_NDEBUG -DOM_NDEBUG -I/usr/src/gtest -Wdate-time -D_FORTIFY_SOURCE=3 -DNDEBUG -I/usr/include/cddlib -I/usr/include/cdd -I/usr/include/eigen3 -I/usr/include/python3.12 -I/usr/include -DBOOST_STACKTRACE_LINK -DNDEBUG -Wno-unknown-pragmas -c-Wno-unused-value -Wno-unused-but-set-variable -Wno-maybe-uninitialized util-tmp.c -o util.o util.d: In function ‘util_getSequenceOfPairsOfSmallIntegers_1’: util.d:52:12: warning: array subscript ‘struct M2_arrayint_struct[0]’ is partly outside array bounds of ‘unsigned char[4]’ [-Warray-bounds=] 52 | is x:Sequence do getSequenceOfPairsOfSmallIntegers(x) | ^~ In file included from ./../../include/M2/gc-include.h:44, from util-exports.h:6, from util-tmp.c:1: util.d:52:29: note: object of size 4 allocated by ‘GC_malloc_atomic’ 52 | is x:Sequence do getSequenceOfPairsOfSmallIntegers(x) | ^~~~~~~~~~~~~~~~ util.d: In function ‘util_getSequenceOfSmallIntegers_1’: util.d:102:19: warning: array subscript ‘struct M2_arrayint_struct[0]’ is partly outside array bounds of ‘unsigned char[4]’ [-Warray-bounds=] 102 | anywhereAbort("internal error: getSequenceOfSmallIntegers."); | ^~ util.d:102:36: note: object of size 4 allocated by ‘GC_malloc_atomic’ 102 | anywhereAbort("internal error: getSequenceOfSmallIntegers."); | ^~~~~~~~~~~~~~~~ util.d: In function ‘util_getNullOrSequenceOfSmallIntegers’: util.d:110:19: warning: array subscript ‘struct M2_arrayint_struct[0]’ is partly outside array bounds of ‘unsigned char[4]’ [-Warray-bounds=] 110 | anywhereAbort("internal error: getSequenceOfSmallIntegers."); | ^~ util.d:110:36: note: object of size 4 allocated by ‘GC_malloc_atomic’ 110 | anywhereAbort("internal error: getSequenceOfSmallIntegers."); | ^~~~~~~~~~~~~~~~ util.d: In function ‘util_getSequenceOfStrings’: util.d:120:12: warning: array subscript ‘structM2_ArrayString_struct[0]’ is partly outside array bounds of ‘unsigned char[8]’ [-Warray-bounds=]120 | new array(string) len length(s) do ( | ^~ util.d:120:32: note: object of size 8 allocated by ‘GC_malloc’ 120 | new array(string) len length(s) do ( | ^~~~~~~~~ util.d: In function ‘util_getSequenceOfRingElements’: util.d:151:12: warning: array subscript ‘struct engine_RawRingElementArray_struct[0]’ is partly outside array bounds of ‘unsigned char[8]’ [-Warray-bounds=] 151 | is a:RawRingElementCell do RawRingElementArray(a.p) | ^~ util.d:151:44: note: object of size 8 allocated by ‘GC_malloc’ 151 | is a:RawRingElementCell do RawRingElementArray(a.p) | ^~~~~~~~~ util.d: In function ‘util_getSequenceOfMatrices’: util.d:170:13: warning: array subscript ‘structengine_RawMatrixArray_struct[0]’ is partly outside array bounds of ‘unsigned char[8]’ [-Warray-bounds=]170 | is a:RawMatrixCell do RawMatrixArray(a.p) | ^~ util.d:170:40: note: object of size 8 allocated by ‘GC_malloc’ 170 | is a:RawMatrixCell do RawMatrixArray(a.p) | ^~~~~~~ util.d: In function ‘util_getSequenceOfMutableMatrices’: util.d:187:13: warning: array subscript ‘structengine_RawMutableMatrixArray_struct[0]’ is partly outside array bounds of ‘unsigned char[8]’ [-Warray-bounds=]187 | is a:RawMutableMatrixCell do RawMutableMatrixArray(a.p) | ^~ util.d:187:47: note: object of size 8 allocated by ‘GC_malloc’ 187 | is a:RawMutableMatrixCell do RawMutableMatrixArray(a.p) | ^~~~~~~~~ /<<PKGBUILDDIR>>/M2/Macaulay2/c/scc1 -O struct.d test -e struct-exports.h && cmp -s struct-exports.h.tmp struct-exports.h || cp struct-exports.h.tmp struct-exports.h test -e struct-exports.h && cmp -s struct-exports.h.tmp struct-exports.h || cp struct-exports.h.tmp struct-exports.h gcc -std=gnu11 -g -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/macaulay2-1.22+ds-5build1 -g3 -O2 -Wno-unused -pipe -Wall -Wno-shadow -Wcast-qual -Wno-sign-conversion -Wno-sign-compare -Wno-parentheses -Wno-sign-compare -Wuninitialized -Wframe-address -Wstrict-aliasing -Wfatal-errors -Wimplicit-function-declaration -Wno-unused-label -Wreturn-type -Wunused-function -Wfatal-errors -I. -I. -I./../e -I./../system -I./../../include -I./../c -I/<<PKGBUILDDIR>>/M2/include -I/<<PKGBUILDDIR>>/M2/include -I/<<PKGBUILDDIR>>/M2/usr-host/include -I/<<PKGBUILDDIR>>/M2/include -I/<<PKGBUILDDIR>>/M2/include -I/<<PKGBUILDDIR>>/M2/usr-host/include -I/<<PKGBUILDDIR>>/M2/include -I/<<PKGBUILDDIR>>/M2/include -I/<<PKGBUILDDIR>>/M2/usr-host/include -Wdate-time -D_FORTIFY_SOURCE=3 -isystem /usr/include/libxml2 -I/usr/include/x86_64-linux-gnu/singular -I/usr/include/singular -DSING_NDEBUG -DOM_NDEBUG -I/usr/src/gtest -Wdate-time -D_FORTIFY_SOURCE=3 -DNDEBUG -I/usr/include/cddlib -I/usr/include/cdd -I/usr/include/eigen3 -I/usr/include/python3.12 -I/usr/include -DBOOST_STACKTRACE_LINK -isystem /usr/include/libxml2 -I/usr/include/x86_64-linux-gnu/singular -I/usr/include/singular -DSING_NDEBUG -DOM_NDEBUG -I/usr/src/gtest -Wdate-time-D_FORTIFY_SOURCE=3 -DNDEBUG -I/usr/include/cddlib -I/usr/include/cdd -I/usr/include/eigen3 -I/usr/include/python3.12-I/usr/include -DBOOST_STACKTRACE_LINK -isystem /usr/include/libxml2 -I/usr/include/x86_64-linux-gnu/singular -I/usr/include/singular -DSING_NDEBUG -DOM_NDEBUG -I/usr/src/gtest -Wdate-time -D_FORTIFY_SOURCE=3 -DNDEBUG -I/usr/include/cddlib -I/usr/include/cdd -I/usr/include/eigen3 -I/usr/include/python3.12 -I/usr/include -DBOOST_STACKTRACE_LINK -DNDEBUG -Wno-unknown-pragmas -c-Wno-unused-value -Wno-unused-but-set-variable -Wno-maybe-uninitialized struct-tmp.c -o struct.o struct.d: In function ‘struct_toIntArray_1’: struct.d:102:19: warning: array subscript ‘struct M2_arrayint_struct[0]’ is partly outside array bounds of ‘unsigned char[4]’ [-Warray-bounds=] 102 | fatal("internal error: toIntArray expected an array of ints"); | ^~ In file included from ./../../include/M2/gc-include.h:44, from struct-exports.h:6, from struct-tmp.c:1: struct.d:102:36: note: object of size 4 allocated by ‘GC_malloc_atomic’ 102 | fatal("internal error: toIntArray expected an array of ints"); | ^~~~~~~~~~~~~~~~
Thanks for the report! This was fixed upstream a while back [1]. Since the next release isn't expected for a month or so, I'll backport the fix soon. Doug [1] https://github.com/Macaulay2/M2/pull/2979
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