Source: sift Version: 4.0.3b-6 Severity: serious Tags: ftbfs sid trixie Justification: fails to build from source
Hi, sift TBFS with -Werror=implicit-function-declaration which was recently enabled by default in dpkg 1.22.6 to support the 64-bit time_t transition. For more information, see https://wiki.debian.org/qa.debian.org/FTBFS#A2024-03-13_-Werror.3Dimplicit-function-declaration make[2]: Entering directory '/build/sift-4.0.3b/src' gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/sift-4.0.3b/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-unused-result -I/usr/include/blimps -O2 -D__MAKE_PREFIX__=\"/u sr\" -Wdate-time -D_FORTIFY_SOURCE=2 -c -o choose_seqs_via_psiblastseedmedian.o choose_seqs_via_psiblastseedmedian.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/sift-4.0.3b/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-unused-result -I/usr/include/blimps -O2 -D__MAKE_PREFIX__=\"/usr\" -Wdate-time -D_FORTIFY_SOURCE=2 -c -o clump_output_alignedseq.o clump_output_alignedseq.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/sift-4.0.3b/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-unused-result -I/usr/include/blimps -O2 -D__MAKE_PREFIX__=\"/usr\" -Wdate-time -D_FORTIFY_SOURCE=2 -c -o consensus_to_seq.o consensus_to_seq.c In file included from choose_seqs_via_psiblastseedmedian.c:20: Matrix_Info.c: In function 'allow_min_and_above': Matrix_Info.c:916:26: error: implicit declaration of function 'min_aa_in_column' [-Werror=implicit-function-declaration] 916 | min_aa = min_aa_in_column (matrix, pos); | ^~~~~~~~~~~~~~~~ In file included from clump_output_alignedseq.c:23: Matrix_Info.c: In function 'allow_min_and_above': Matrix_Info.c:916:26: error: implicit declaration of function 'min_aa_in_column' [-Werror=implicit-function-declaration] 916 | min_aa = min_aa_in_column (matrix, pos); | ^~~~~~~~~~~~~~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/sift-4.0.3b/src=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-unused-result -I/usr/include/blimps -O2 -D__MAKE_PREFIX__=\"/usr\" -Wdate-time -D_FORTIFY_SOURCE=2 -c -o info_on_seqs.o info_on_seqs.c In file included from info_on_seqs.c:10: Matrix_Info.c: In function 'allow_min_and_above': Matrix_Info.c:916:26: error: implicit declaration of function 'min_aa_in_column' [-Werror=implicit-function-declaration] 916 | min_aa = min_aa_in_column (matrix, pos); | ^~~~~~~~~~~~~~~~ cc1: some warnings being treated as errors make[2]: *** [<builtin>: choose_seqs_via_psiblastseedmedian.o] Error 1 Andreas
