Source: skimage Version: 0.22.0-3 Severity: serious X-Debbugs-CC: pyt...@packages.debian.org Tags: sid trixie User: debian...@lists.debian.org Usertags: needs-update Control: affects -1 src:pytest
Dear maintainer(s),With a recent upload of pytest the autopkgtest of skimage fails in testing on s390x when that autopkgtest is run with the binary packages of pytest from unstable. It passes when run with only packages from testing. In tabular form:
pass fail
pytest from testing 8.1.2-1
skimage from testing 0.22.0-3
all others from testing from testing
I copied some of the output at the bottom of this report. I'll note that
s390x is our only big endian architecture with autopgktest.
Currently this regression is blocking the migration of pytest to testing [1]. Of course, pytest shouldn't just break your autopkgtest (or even worse, your package), but due to the nature of the package pytest I suspect that your package just needs to update to the new situation.
If this is a real problem in your package (and not only in your autopkgtest), the right binary package(s) from pytest should really add a versioned Breaks on the unfixed version of (one of your) package(s). Note: the Breaks is nice even if the issue is only in the autopkgtest as it helps the migration software to figure out the right versions to combine in the tests.
More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation Paul [1] https://qa.debian.org/excuses.php?package=pytest https://ci.debian.net/data/autopkgtest/testing/s390x/s/skimage/46978110/log.gz=================================== FAILURES =================================== 300s ______________________________ test_imread_handle ______________________________
300s 300s def test_imread_handle():
300s expected = np.load(fetch('data/chessboard_GRAY_U8.npy'))
300s with open(fetch('data/chessboard_GRAY_U16.tif'), 'rb') as fh:
300s img = imread(fh)
300s > assert img.dtype == np.uint16
300s E AssertionError: assert dtype('<u2') == <class 'numpy.uint16'>
300s E + where dtype('<u2') = array([[255, 255, 255, ..., 0,
0, 0],\n [255, 255, 255, ..., 0, 0, 0],\n [255, 255,
255, ..., 0, 0, 0],\n ...,\n [ 0, 0, 0, ..., 255,
255, 255],\n [ 0, 0, 0, ..., 255, 255, 255],\n [ 0,
0, 0, ..., 255, 255, 255]], dtype='<u2').dtype
300s E + and <class 'numpy.uint16'> = np.uint16300s 300s /usr/lib/python3/dist-packages/skimage/io/tests/test_tifffile.py:48: AssertionError 300s =============================== warnings summary ===============================
300s filters/tests/test_unsharp_mask.py: 480 warnings300s /usr/lib/python3/dist-packages/skimage/filters/tests/test_unsharp_mask.py:26: RuntimeWarning: invalid value encountered in cast
300s array = ((array + offset) * 128).astype(dtype) 300s 300s io/tests/test_pil.py::test_png_round_trip 300s io/tests/test_pil.py::test_imsave_filelike300s /usr/lib/python3/dist-packages/skimage/io/_plugins/pil_plugin.py:105: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead
300s frame = np.fromstring(frame.tobytes(), dtype) 300s 300s measure/tests/test_fit.py::test_ellipse_parameter_stability300s /usr/lib/python3/dist-packages/skimage/measure/fit.py:526: RuntimeWarning: divide by zero encountered in scalar divide
300s phi = 0.5 * np.arctan((2. * b) / (a - c))300s 300s transform/tests/test_pyramids.py::test_pyramid_dtype_support[pyramid_gaussian-uint8] 300s transform/tests/test_pyramids.py::test_pyramid_dtype_support[pyramid_laplacian-uint8] 300s /usr/lib/python3/dist-packages/skimage/transform/tests/test_pyramids.py:208: RuntimeWarning: invalid value encountered in cast
300s img = np.random.randn(32, 8).astype(dtype)300s 300s ../../../../usr/lib/python3/dist-packages/_pytest/cacheprovider.py:446 300s /usr/lib/python3/dist-packages/_pytest/cacheprovider.py:446: PytestCacheWarning: could not create cache path /usr/lib/python3/dist-packages/skimage/.pytest_cache/v/cache/nodeids: [Errno 13] Permission denied: '/usr/lib/python3/dist-packages/skimage/.pytest_cache'
300s config.cache.set("cache/nodeids", sorted(self.cached_nodeids))
300s 300s
../../../../usr/lib/python3/dist-packages/_pytest/cacheprovider.py:398
300s /usr/lib/python3/dist-packages/_pytest/cacheprovider.py:398:
PytestCacheWarning: could not create cache path
/usr/lib/python3/dist-packages/skimage/.pytest_cache/v/cache/lastfailed:
[Errno 13] Permission denied:
'/usr/lib/python3/dist-packages/skimage/.pytest_cache'
300s config.cache.set("cache/lastfailed", self.lastfailed)
300s 300s ../../../../usr/lib/python3/dist-packages/_pytest/stepwise.py:57
300s /usr/lib/python3/dist-packages/_pytest/stepwise.py:57:
PytestCacheWarning: could not create cache path
/usr/lib/python3/dist-packages/skimage/.pytest_cache/v/cache/stepwise:
[Errno 13] Permission denied:
'/usr/lib/python3/dist-packages/skimage/.pytest_cache'
300s session.config.cache.set(STEPWISE_CACHE_DIR, [])300s 300s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 300s =========================== short test summary info ============================ 300s FAILED ../../../../usr/lib/python3/dist-packages/skimage/io/tests/test_tifffile.py::test_imread_handle 300s = 1 failed, 7880 passed, 120 skipped, 91 xfailed, 27 xpassed, 488 warnings in 195.50s (0:03:15) =
300s autopkgtest [16:16:32]: test python3
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