Package: src:mdanalysis
Version: 2.5.0+dfsg1-2
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules build
dh build --with python3,sphinxdoc --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.12 with "build"
module
I: pybuild base:311: python3.12 -m build --skip-dependency-check --no-isolation --wheel
--outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12_mdanalysis
* Building wheel...
performance hint: MDAnalysis/lib/c_distances.pyx:301:5: Exception check on
'_minimum_image_orthogonal' will always require the GIL to be acquired.
Possible solutions:
1. Declare '_minimum_image_orthogonal' as 'noexcept' if you control the
definition and you're sure you don't want the function to raise exceptions.
2. Use an 'int' return type on '_minimum_image_orthogonal' to allow an
error code to be returned.
performance hint: MDAnalysis/lib/c_distances.pyx:328:5: Exception check on
'_minimum_image_triclinic' will always require the GIL to be acquired.
[... snipped ...]
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/contacts.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/analysis
creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/data
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/data/filenames.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/data
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/data/janin_ref_data.npy
-> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/data
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/data/rama_ref_data.npy
-> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/data
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/data/__init__.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/data
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/polymer.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/analysis
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/waterdynamics.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/lineardensity.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/atomicdistances.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/align.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/analysis
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/rms.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/analysis
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/bat.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/analysis
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/nucleicacids.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis
creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hydrogenbonds
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hydrogenbonds
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hydrogenbonds
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/hydrogenbonds/__init__.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hydrogenbonds
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hydrogenbonds
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/diffusionmap.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis
creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/legacy
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/legacy/x3dna.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/legacy
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/legacy/__init__.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/legacy
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/gnm.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/analysis
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/msd.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/analysis
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/leaflet.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/analysis
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/density.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/analysis
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/psa.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/analysis
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/dihedrals.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/analysis
creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hole2
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/hole2/hole.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hole2
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/hole2/templates.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hole2
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/hole2/utils.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hole2
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/hole2/__init__.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hole2
creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hbonds
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/hbonds/hbond_autocorrel.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hbonds
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/hbonds/__init__.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hbonds
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/distances.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/analysis
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/analysis/__init__.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/analysis
creating build/bdist.linux-x86_64/wheel/MDAnalysis/auxiliary
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/auxiliary/base.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/auxiliary
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/auxiliary/XVG.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/auxiliary
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/auxiliary/EDR.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/auxiliary
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/auxiliary/core.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/auxiliary
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/auxiliary/__init__.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/auxiliary
creating build/bdist.linux-x86_64/wheel/MDAnalysis/core
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/core/topologyattrs.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/core
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/core/topology.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/core
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/core/universe.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/core
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/core/_get_readers.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/core
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/core/topologyobjects.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/core
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/core/selection.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/core
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/core/accessors.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/core
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/core/groups.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/core
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/core/__init__.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/core
creating build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/GSDParser.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/base.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/MinimalParser.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/TXYZParser.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/PSFParser.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/GROParser.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
creating build/bdist.linux-x86_64/wheel/MDAnalysis/topology/tpr
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/tpr/utils.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology/tpr
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/tpr/obj.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology/tpr
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/tpr/__init__.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/topology/tpr
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/tpr/setting.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/topology/tpr
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/ExtendedPDBParser.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/TPRParser.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/DMSParser.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/ParmEdParser.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/PQRParser.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/PDBQTParser.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/tables.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/MMTFParser.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/DLPolyParser.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/guessers.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/GMSParser.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/ITPParser.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/XYZParser.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/CRDParser.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/TOPParser.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/FHIAIMSParser.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/LAMMPSParser.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/core.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/PDBParser.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/MOL2Parser.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/__init__.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/topology
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/topology/HoomdXMLParser.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/topology
creating build/bdist.linux-x86_64/wheel/MDAnalysis/tests
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/tests/datafiles.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/tests
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/tests/__init__.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/tests
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/exceptions.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis
creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/mdamath.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/_cutil.cpp ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/cython_util.pxd
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/cython_util.c
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/libmdaxdr.pyx
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/libmdaxdr.cpython-311-x86_64-linux-gnu.so
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/libmdaxdr.c
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats
creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/src
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/src/xdrfile_trr.c ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/src
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/src/xdrfile.c
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/src
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/src/trr_seek.c
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/src
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/src/xtc_seek.c
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/src
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/src/xdrfile_xtc.c ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/src
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/libmdaxdr.pxd
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/libdcd.pyx ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/libdcd.cpython-311-x86_64-linux-gnu.so
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/cython_util.cpython-311-x86_64-linux-gnu.so
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/cython_util.pyx
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/libdcd.pxd ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/libdcd.c ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/__init__.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats
creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/include/xdrfile.h ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/include/xdrfile_trr.h
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/include/fastio.h
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/include/endianswap.h
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/include/xdrfile_xtc.h
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/include/xtc_seek.h ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/include/readdcd.h ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/formats/include/trr_seek.h ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/correlations.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/nsgrid.pyx ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/_transformations.cpython-311-x86_64-linux-gnu.so
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/util.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/src
creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/src/transformations
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/src/transformations/LICENCE
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/src/transformations
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/src/transformations/transformations.c
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/src/transformations
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/src/transformations/AUTHOR ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib/src/transformations
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/NeighborSearch.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/transformations.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/c_distances_openmp.cpython-311-x86_64-linux-gnu.so
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/_augment.cpp ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/c_distances.cpython-311-x86_64-linux-gnu.so
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/nsgrid.cpp ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/libmdanalysis
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/libmdanalysis/__init__.pxd ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib/libmdanalysis
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/c_distances_openmp.pyx
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/pkdtree.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/nsgrid.cpython-311-x86_64-linux-gnu.so
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/c_distances.pyx ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/_cutil.cpython-311-x86_64-linux-gnu.so
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/picklable_file_io.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/c_distances_openmp.c
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/_cutil.pyx ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/_augment.cpython-311-x86_64-linux-gnu.so
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/qcprot.cpython-311-x86_64-linux-gnu.so
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/qcprot.c ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/_cutil.pxd ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/_distopia.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/log.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/c_distances.c ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/distances.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/qcprot.pyx ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/__init__.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/_augment.pyx ->
build/bdist.linux-x86_64/wheel/MDAnalysis/lib
creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/include
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/lib/include/calc_distances.h
-> build/bdist.linux-x86_64/wheel/MDAnalysis/lib/include
creating build/bdist.linux-x86_64/wheel/MDAnalysis/visualization
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/visualization/streamlines.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/visualization
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/visualization/streamlines_3D.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/visualization
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/visualization/__init__.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/visualization
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/authors.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis
creating build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/XYZ.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/DLPoly.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/PQR.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/base.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/timestep.pyx
-> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/DCD.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/XTC.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/chemfiles.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/INPCRD.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/PDBQT.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/MMTF.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/NAMDBIN.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/LAMMPS.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/timestep.pxd
-> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/timestep.cpython-311-x86_64-linux-gnu.so
-> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/GSD.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/chain.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/DMS.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/memory.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/TRR.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/ParmEd.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/null.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/TRJ.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/CRD.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/MOL2.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/timestep.cpp
-> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/H5MD.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/TRZ.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/PDB.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/XDR.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/GMS.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/core.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/FHIAIMS.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/__init__.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/TXYZ.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/TNG.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/coordinates/GRO.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/version.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis
creating build/bdist.linux-x86_64/wheel/MDAnalysis/transformations
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/transformations/boxdimensions.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/transformations
copying
build/lib.linux-x86_64-cpython-311/MDAnalysis/transformations/positionaveraging.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/transformations
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/transformations/translate.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/transformations
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/transformations/base.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/transformations
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/transformations/fit.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis/transformations
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/transformations/rotate.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/transformations
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/transformations/nojump.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/transformations
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/transformations/__init__.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/transformations
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/transformations/wrap.py
-> build/bdist.linux-x86_64/wheel/MDAnalysis/transformations
copying build/lib.linux-x86_64-cpython-311/MDAnalysis/__init__.py ->
build/bdist.linux-x86_64/wheel/MDAnalysis
running install_egg_info
Copying MDAnalysis.egg-info to
build/bdist.linux-x86_64/wheel/MDAnalysis-2.5.0.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/MDAnalysis-2.5.0.dist-info/WHEEL
creating
'/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_mdanalysis/.tmp-m5bzbqa1/MDAnalysis-2.5.0-cp311-cp311-linux_x86_64.whl'
and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'MDAnalysis/__init__.py'
adding 'MDAnalysis/authors.py'
adding 'MDAnalysis/due.py'
adding 'MDAnalysis/exceptions.py'
adding 'MDAnalysis/units.py'
adding 'MDAnalysis/version.py'
adding 'MDAnalysis/analysis/__init__.py'
adding 'MDAnalysis/analysis/align.py'
adding 'MDAnalysis/analysis/atomicdistances.py'
adding 'MDAnalysis/analysis/base.py'
adding 'MDAnalysis/analysis/bat.py'
adding 'MDAnalysis/analysis/contacts.py'
adding 'MDAnalysis/analysis/density.py'
adding 'MDAnalysis/analysis/dielectric.py'
adding 'MDAnalysis/analysis/diffusionmap.py'
adding 'MDAnalysis/analysis/dihedrals.py'
adding 'MDAnalysis/analysis/distances.py'
adding 'MDAnalysis/analysis/gnm.py'
adding 'MDAnalysis/analysis/helix_analysis.py'
adding 'MDAnalysis/analysis/leaflet.py'
adding 'MDAnalysis/analysis/lineardensity.py'
adding 'MDAnalysis/analysis/msd.py'
adding 'MDAnalysis/analysis/nucleicacids.py'
adding 'MDAnalysis/analysis/nuclinfo.py'
adding 'MDAnalysis/analysis/pca.py'
adding 'MDAnalysis/analysis/polymer.py'
adding 'MDAnalysis/analysis/psa.py'
adding 'MDAnalysis/analysis/rdf.py'
adding 'MDAnalysis/analysis/rms.py'
adding 'MDAnalysis/analysis/waterdynamics.py'
adding 'MDAnalysis/analysis/data/__init__.py'
adding 'MDAnalysis/analysis/data/filenames.py'
adding 'MDAnalysis/analysis/data/janin_ref_data.npy'
adding 'MDAnalysis/analysis/data/rama_ref_data.npy'
adding 'MDAnalysis/analysis/encore/__init__.py'
adding 'MDAnalysis/analysis/encore/bootstrap.py'
adding 'MDAnalysis/analysis/encore/confdistmatrix.py'
adding 'MDAnalysis/analysis/encore/covariance.py'
adding 'MDAnalysis/analysis/encore/cutils.c'
adding 'MDAnalysis/analysis/encore/cutils.cpython-311-x86_64-linux-gnu.so'
adding 'MDAnalysis/analysis/encore/cutils.pyx'
adding 'MDAnalysis/analysis/encore/similarity.py'
adding 'MDAnalysis/analysis/encore/utils.py'
adding 'MDAnalysis/analysis/encore/clustering/ClusterCollection.py'
adding 'MDAnalysis/analysis/encore/clustering/ClusteringMethod.py'
adding 'MDAnalysis/analysis/encore/clustering/__init__.py'
adding 'MDAnalysis/analysis/encore/clustering/affinityprop.c'
adding
'MDAnalysis/analysis/encore/clustering/affinityprop.cpython-311-x86_64-linux-gnu.so'
adding 'MDAnalysis/analysis/encore/clustering/affinityprop.pyx'
adding 'MDAnalysis/analysis/encore/clustering/cluster.py'
adding 'MDAnalysis/analysis/encore/clustering/include/ap.h'
adding 'MDAnalysis/analysis/encore/clustering/src/ap.c'
adding
'MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py'
adding 'MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py'
adding
'MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py'
adding
'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c'
adding
'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-311-x86_64-linux-gnu.so'
adding
'MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx'
adding 'MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h'
adding 'MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c'
adding 'MDAnalysis/analysis/hbonds/__init__.py'
adding 'MDAnalysis/analysis/hbonds/hbond_autocorrel.py'
adding 'MDAnalysis/analysis/hole2/__init__.py'
adding 'MDAnalysis/analysis/hole2/hole.py'
adding 'MDAnalysis/analysis/hole2/templates.py'
adding 'MDAnalysis/analysis/hole2/utils.py'
adding 'MDAnalysis/analysis/hydrogenbonds/__init__.py'
adding 'MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py'
adding 'MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py'
adding 'MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py'
adding 'MDAnalysis/analysis/legacy/__init__.py'
adding 'MDAnalysis/analysis/legacy/x3dna.py'
adding 'MDAnalysis/auxiliary/EDR.py'
adding 'MDAnalysis/auxiliary/XVG.py'
adding 'MDAnalysis/auxiliary/__init__.py'
adding 'MDAnalysis/auxiliary/base.py'
adding 'MDAnalysis/auxiliary/core.py'
adding 'MDAnalysis/converters/OpenMM.py'
adding 'MDAnalysis/converters/OpenMMParser.py'
adding 'MDAnalysis/converters/ParmEd.py'
adding 'MDAnalysis/converters/ParmEdParser.py'
adding 'MDAnalysis/converters/RDKit.py'
adding 'MDAnalysis/converters/RDKitParser.py'
adding 'MDAnalysis/converters/__init__.py'
adding 'MDAnalysis/coordinates/CRD.py'
adding 'MDAnalysis/coordinates/DCD.py'
adding 'MDAnalysis/coordinates/DLPoly.py'
adding 'MDAnalysis/coordinates/DMS.py'
adding 'MDAnalysis/coordinates/FHIAIMS.py'
adding 'MDAnalysis/coordinates/GMS.py'
adding 'MDAnalysis/coordinates/GRO.py'
adding 'MDAnalysis/coordinates/GSD.py'
adding 'MDAnalysis/coordinates/H5MD.py'
adding 'MDAnalysis/coordinates/INPCRD.py'
adding 'MDAnalysis/coordinates/LAMMPS.py'
adding 'MDAnalysis/coordinates/MMTF.py'
adding 'MDAnalysis/coordinates/MOL2.py'
adding 'MDAnalysis/coordinates/NAMDBIN.py'
adding 'MDAnalysis/coordinates/PDB.py'
adding 'MDAnalysis/coordinates/PDBQT.py'
adding 'MDAnalysis/coordinates/PQR.py'
adding 'MDAnalysis/coordinates/ParmEd.py'
adding 'MDAnalysis/coordinates/TNG.py'
adding 'MDAnalysis/coordinates/TRJ.py'
adding 'MDAnalysis/coordinates/TRR.py'
adding 'MDAnalysis/coordinates/TRZ.py'
adding 'MDAnalysis/coordinates/TXYZ.py'
adding 'MDAnalysis/coordinates/XDR.py'
adding 'MDAnalysis/coordinates/XTC.py'
adding 'MDAnalysis/coordinates/XYZ.py'
adding 'MDAnalysis/coordinates/__init__.py'
adding 'MDAnalysis/coordinates/base.py'
adding 'MDAnalysis/coordinates/chain.py'
adding 'MDAnalysis/coordinates/chemfiles.py'
adding 'MDAnalysis/coordinates/core.py'
adding 'MDAnalysis/coordinates/memory.py'
adding 'MDAnalysis/coordinates/null.py'
adding 'MDAnalysis/coordinates/timestep.cpp'
adding 'MDAnalysis/coordinates/timestep.cpython-311-x86_64-linux-gnu.so'
adding 'MDAnalysis/coordinates/timestep.pxd'
adding 'MDAnalysis/coordinates/timestep.pyx'
adding 'MDAnalysis/core/__init__.py'
adding 'MDAnalysis/core/_get_readers.py'
adding 'MDAnalysis/core/accessors.py'
adding 'MDAnalysis/core/groups.py'
adding 'MDAnalysis/core/selection.py'
adding 'MDAnalysis/core/topology.py'
adding 'MDAnalysis/core/topologyattrs.py'
adding 'MDAnalysis/core/topologyobjects.py'
adding 'MDAnalysis/core/universe.py'
adding 'MDAnalysis/lib/NeighborSearch.py'
adding 'MDAnalysis/lib/__init__.py'
adding 'MDAnalysis/lib/_augment.cpp'
adding 'MDAnalysis/lib/_augment.cpython-311-x86_64-linux-gnu.so'
adding 'MDAnalysis/lib/_augment.pyx'
adding 'MDAnalysis/lib/_cutil.cpp'
adding 'MDAnalysis/lib/_cutil.cpython-311-x86_64-linux-gnu.so'
adding 'MDAnalysis/lib/_cutil.pxd'
adding 'MDAnalysis/lib/_cutil.pyx'
adding 'MDAnalysis/lib/_distopia.py'
adding 'MDAnalysis/lib/_transformations.cpython-311-x86_64-linux-gnu.so'
adding 'MDAnalysis/lib/c_distances.c'
adding 'MDAnalysis/lib/c_distances.cpython-311-x86_64-linux-gnu.so'
adding 'MDAnalysis/lib/c_distances.pyx'
adding 'MDAnalysis/lib/c_distances_openmp.c'
adding 'MDAnalysis/lib/c_distances_openmp.cpython-311-x86_64-linux-gnu.so'
adding 'MDAnalysis/lib/c_distances_openmp.pyx'
adding 'MDAnalysis/lib/correlations.py'
adding 'MDAnalysis/lib/distances.py'
adding 'MDAnalysis/lib/log.py'
adding 'MDAnalysis/lib/mdamath.py'
adding 'MDAnalysis/lib/nsgrid.cpp'
adding 'MDAnalysis/lib/nsgrid.cpython-311-x86_64-linux-gnu.so'
adding 'MDAnalysis/lib/nsgrid.pyx'
adding 'MDAnalysis/lib/picklable_file_io.py'
adding 'MDAnalysis/lib/pkdtree.py'
adding 'MDAnalysis/lib/qcprot.c'
adding 'MDAnalysis/lib/qcprot.cpython-311-x86_64-linux-gnu.so'
adding 'MDAnalysis/lib/qcprot.pyx'
adding 'MDAnalysis/lib/transformations.py'
adding 'MDAnalysis/lib/util.py'
adding 'MDAnalysis/lib/formats/__init__.py'
adding 'MDAnalysis/lib/formats/cython_util.c'
adding 'MDAnalysis/lib/formats/cython_util.cpython-311-x86_64-linux-gnu.so'
adding 'MDAnalysis/lib/formats/cython_util.pxd'
adding 'MDAnalysis/lib/formats/cython_util.pyx'
adding 'MDAnalysis/lib/formats/libdcd.c'
adding 'MDAnalysis/lib/formats/libdcd.cpython-311-x86_64-linux-gnu.so'
adding 'MDAnalysis/lib/formats/libdcd.pxd'
adding 'MDAnalysis/lib/formats/libdcd.pyx'
adding 'MDAnalysis/lib/formats/libmdaxdr.c'
adding 'MDAnalysis/lib/formats/libmdaxdr.cpython-311-x86_64-linux-gnu.so'
adding 'MDAnalysis/lib/formats/libmdaxdr.pxd'
adding 'MDAnalysis/lib/formats/libmdaxdr.pyx'
adding 'MDAnalysis/lib/formats/include/endianswap.h'
adding 'MDAnalysis/lib/formats/include/fastio.h'
adding 'MDAnalysis/lib/formats/include/readdcd.h'
adding 'MDAnalysis/lib/formats/include/trr_seek.h'
adding 'MDAnalysis/lib/formats/include/xdrfile.h'
adding 'MDAnalysis/lib/formats/include/xdrfile_trr.h'
adding 'MDAnalysis/lib/formats/include/xdrfile_xtc.h'
adding 'MDAnalysis/lib/formats/include/xtc_seek.h'
adding 'MDAnalysis/lib/formats/src/trr_seek.c'
adding 'MDAnalysis/lib/formats/src/xdrfile.c'
adding 'MDAnalysis/lib/formats/src/xdrfile_trr.c'
adding 'MDAnalysis/lib/formats/src/xdrfile_xtc.c'
adding 'MDAnalysis/lib/formats/src/xtc_seek.c'
adding 'MDAnalysis/lib/include/calc_distances.h'
adding 'MDAnalysis/lib/libmdanalysis/__init__.pxd'
adding 'MDAnalysis/lib/src/transformations/AUTHOR'
adding 'MDAnalysis/lib/src/transformations/LICENCE'
adding 'MDAnalysis/lib/src/transformations/transformations.c'
adding 'MDAnalysis/selections/__init__.py'
adding 'MDAnalysis/selections/base.py'
adding 'MDAnalysis/selections/charmm.py'
adding 'MDAnalysis/selections/gromacs.py'
adding 'MDAnalysis/selections/jmol.py'
adding 'MDAnalysis/selections/pymol.py'
adding 'MDAnalysis/selections/vmd.py'
adding 'MDAnalysis/tests/__init__.py'
adding 'MDAnalysis/tests/datafiles.py'
adding 'MDAnalysis/topology/CRDParser.py'
adding 'MDAnalysis/topology/DLPolyParser.py'
adding 'MDAnalysis/topology/DMSParser.py'
adding 'MDAnalysis/topology/ExtendedPDBParser.py'
adding 'MDAnalysis/topology/FHIAIMSParser.py'
adding 'MDAnalysis/topology/GMSParser.py'
adding 'MDAnalysis/topology/GROParser.py'
adding 'MDAnalysis/topology/GSDParser.py'
adding 'MDAnalysis/topology/HoomdXMLParser.py'
adding 'MDAnalysis/topology/ITPParser.py'
adding 'MDAnalysis/topology/LAMMPSParser.py'
adding 'MDAnalysis/topology/MMTFParser.py'
adding 'MDAnalysis/topology/MOL2Parser.py'
adding 'MDAnalysis/topology/MinimalParser.py'
adding 'MDAnalysis/topology/PDBParser.py'
adding 'MDAnalysis/topology/PDBQTParser.py'
adding 'MDAnalysis/topology/PQRParser.py'
adding 'MDAnalysis/topology/PSFParser.py'
adding 'MDAnalysis/topology/ParmEdParser.py'
adding 'MDAnalysis/topology/TOPParser.py'
adding 'MDAnalysis/topology/TPRParser.py'
adding 'MDAnalysis/topology/TXYZParser.py'
adding 'MDAnalysis/topology/XYZParser.py'
adding 'MDAnalysis/topology/__init__.py'
adding 'MDAnalysis/topology/base.py'
adding 'MDAnalysis/topology/core.py'
adding 'MDAnalysis/topology/guessers.py'
adding 'MDAnalysis/topology/tables.py'
adding 'MDAnalysis/topology/tpr/__init__.py'
adding 'MDAnalysis/topology/tpr/obj.py'
adding 'MDAnalysis/topology/tpr/setting.py'
adding 'MDAnalysis/topology/tpr/utils.py'
adding 'MDAnalysis/transformations/__init__.py'
adding 'MDAnalysis/transformations/base.py'
adding 'MDAnalysis/transformations/boxdimensions.py'
adding 'MDAnalysis/transformations/fit.py'
adding 'MDAnalysis/transformations/nojump.py'
adding 'MDAnalysis/transformations/positionaveraging.py'
adding 'MDAnalysis/transformations/rotate.py'
adding 'MDAnalysis/transformations/translate.py'
adding 'MDAnalysis/transformations/wrap.py'
adding 'MDAnalysis/visualization/__init__.py'
adding 'MDAnalysis/visualization/streamlines.py'
adding 'MDAnalysis/visualization/streamlines_3D.py'
adding 'MDAnalysis-2.5.0.dist-info/AUTHORS'
adding 'MDAnalysis-2.5.0.dist-info/LICENSE'
adding 'MDAnalysis-2.5.0.dist-info/METADATA'
adding 'MDAnalysis-2.5.0.dist-info/WHEEL'
adding 'MDAnalysis-2.5.0.dist-info/top_level.txt'
adding 'MDAnalysis-2.5.0.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Successfully built MDAnalysis-2.5.0-cp311-cp311-linux_x86_64.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.11 with
"installer" module
dh_auto_build: error: pybuild --build -i python{version} -p "3.12 3.11"
returned exit code 13
make: *** [debian/rules:14: build] Error 25
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202405/
About the archive rebuild: The build was made on virtual machines
of type m6a.large and r6a.large from AWS, using sbuild and a
reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.
