Source: discosnp Version: 1:2.6.2-3 User: [email protected] Usertags: syntaxwarning
Hi Maintainer The SyntaxWarning below were emitted when this package was tested with pipuarts[1]. Regards Graham [1] https://piuparts.debian.org/sid/source/d/discosnp.html Setting up python3 (3.12.4-1) ... /usr/share/discosnp/discoSnpRAD/clustering_scripts/fasta_and_cluster_to_filtered_vcf.py:146: SyntaxWarning: invalid escape sequence '\w' tig_type = len(re.findall("left_\w+_length",line)) /usr/share/discosnp/scripts/ClassVCF_creator.py:82: SyntaxWarning: invalid escape sequence '\d' parsingCigarCode=re.findall('(\d+|[A-Za-z])',cigarcode) #ParsingCigarCode=['2', 'S', '3', 'M', '1', 'I', '25', 'M'] /usr/share/discosnp/scripts/ClassVCF_creator.py:566: SyntaxWarning: invalid escape sequence '\d' parsingCigarCode=re.findall('(\d+|[A-Za-z])',cigarcode) #ParsingCigarCode=['2', 'S', '3', 'M', '1', 'I', '25', 'M'] /usr/share/discosnp/scripts/ClassVCF_creator.py:639: SyntaxWarning: invalid escape sequence '\d' parsingPosMut=re.findall('(\d+|[A-Za-z]|\^)',posMut) /usr/share/discosnp/scripts/create_filtered_vcf.py:90: SyntaxWarning: invalid escape sequence '\w' tig_type = len(re.findall("left_\w+_length",line)) /usr/share/discosnp/scripts/vcf_formatting_functions.py:94: SyntaxWarning: invalid escape sequence '\w' ty = re.findall("(\w+)_higher_path",path_name)[0] /usr/share/discosnp/scripts/vcf_formatting_functions.py:102: SyntaxWarning: invalid escape sequence '\d' unitig_len = re.findall("_unitig_length_(\d+)","|".join(splitted_1[4:6])) /usr/share/discosnp/scripts/vcf_formatting_functions.py:106: SyntaxWarning: invalid escape sequence '\d' contig_len = re.findall("_contig_length_(\d+)","|".join(splitted_1[6:8])) /usr/share/discosnp/scripts/vcf_formatting_functions.py:139: SyntaxWarning: invalid escape sequence '\d' POS, REF, ALT = re.findall("P_\d+:(\d+)_(\w)/(\w)",pol)[0] /usr/share/discosnp/scripts/vcf_formatting_functions.py:142: SyntaxWarning: invalid escape sequence '\d' POS, indel_size = re.findall("P_\d+:(\d+)_(\d+)",pol)[0] Setting up discosnp (1:2.6.2-3+b1) ...
