Source: nanosv Version: 1.2.4+git20190409.c1ae30c-6 User: [email protected] Usertags: syntaxwarning
Hi Maintainer The SyntaxWarning below were emitted when this package was tested with pipuarts[1]. Regards Graham [1] https://piuparts.debian.org/sid/source/n/nanosv.html Setting up nanosv (1.2.4+git20190409.c1ae30c-6) ... /usr/lib/python3/dist-packages/nanosv/utils/parse_bam.py:43: SyntaxWarning: invalid escape sequence '\.' sample_name = re.sub('(\.sorted)?\.bam$', '', str(NanoSV.opts_bam)) /usr/lib/python3/dist-packages/nanosv/utils/parse_bam.py:206: SyntaxWarning: invalid escape sequence '\d' pattern_list[i] += '[' + str(int(NanoSV.opts_min_indel_size[i]) + 1) + '-9]\d{' + str(j) + ',}' /usr/lib/python3/dist-packages/nanosv/utils/parse_bam.py:210: SyntaxWarning: invalid escape sequence '\d' pattern_list.append("\d{" + str(len(NanoSV.opts_min_indel_size) + 1) + ",}") /usr/lib/python3/dist-packages/nanosv/utils/parse_bam.py:392: SyntaxWarning: invalid escape sequence '\^' md_tag = re.split("\^\D+", md) /usr/lib/python3/dist-packages/nanosv/utils/parse_bam.py:416: SyntaxWarning: invalid escape sequence '\D' if re.search("\D+", md_tag[md_cursor]): /usr/lib/python3/dist-packages/nanosv/utils/parse_bam.py:418: SyntaxWarning: invalid escape sequence '\D' for m in re.split("\D", md_tag[md_cursor]):
