Source: pbsuite Version: 15.8.24+dfsg-7 User: [email protected] Usertags: syntaxwarning
Hi Maintainer The SyntaxWarning below were emitted when this package was tested with pipuarts[1]. Regards Graham [1] https://piuparts.debian.org/sid/source/p/pbsuite.html Setting up python3-pbsuite-utils (15.8.24+dfsg-7) ... /usr/lib/python3/dist-packages/pbsuite/utils/BamStat.py:75: SyntaxWarning: invalid escape sequence '\d' for i in re.findall("\d+|\^?[ATCGN]+", md): /usr/lib/python3/dist-packages/pbsuite/utils/FileHandlers.py:49: SyntaxWarning: invalid escape sequence '\s' splRE = re.compile("\s+") /usr/lib/python3/dist-packages/pbsuite/utils/FileHandlers.py:60: SyntaxWarning: invalid escape sequence '\s' splRE = re.compile("\s+") /usr/lib/python3/dist-packages/pbsuite/utils/FileHandlers.py:87: SyntaxWarning: invalid escape sequence '\s' self[key] = list(map(int, re.split("\s+", self[key].getvalue().strip()))) /usr/lib/python3/dist-packages/pbsuite/utils/FileHandlers.py:475: SyntaxWarning: invalid escape sequence '\d' subreadGrab = re.compile(".*/(\d+)_(\d+)$") /usr/lib/python3/dist-packages/pbsuite/utils/FileHandlers.py:499: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) /usr/lib/python3/dist-packages/pbsuite/utils/FileHandlers.py:609: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) /usr/lib/python3/dist-packages/pbsuite/utils/VCFIO.py:110: SyntaxWarning: invalid escape sequence '\s' METARE = re.compile(('##\s*(?P<key>\w+)\s*=\s*\<\s*ID\s*=\s*(?P<id>\w+)\s*' /usr/lib/python3/dist-packages/pbsuite/utils/VCFIO.py:111: SyntaxWarning: invalid escape sequence '\s' ',\s*(Number\s*=\s*(?P<number>[0-9.])\s*,' /usr/lib/python3/dist-packages/pbsuite/utils/VCFIO.py:112: SyntaxWarning: invalid escape sequence '\s' '\s*Type\s*=\s*(?P<type>\w+)\s*,)?' /usr/lib/python3/dist-packages/pbsuite/utils/VCFIO.py:113: SyntaxWarning: invalid escape sequence '\s' '\s*Description\s*=\s*"(?P<description>.*)"\s*\>\s*'),\ /usr/lib/python3/dist-packages/pbsuite/utils/jellyoutputrename.py:22: SyntaxWarning: invalid escape sequence '\d' regex = re.compile("ref\d{7}")
