Source: genomicsdb
Version: 1.5.3-3
Severity: important
Tags: ftbfs
X-Debbugs-Cc: [email protected]
Control: block 1072674 by -1
Control: affects -1 src:fmtlib
Dear maintainers,
fmtlib 10 transition will start soon, your package genomicsdb FTBFS
with fmtlib 10.1.1+ds1-2 in experimental.
Here is some related log:
[ 40%] Building CXX object
src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/main && /usr/bin/c++
-DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.3-SNAPSHOT-\"
-DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64
-I/<<PKGBUILDDIR>>/genomicsdb-htslib -I/<<PKGBUILDDIR>>/genomicsdb-tiledb
-I/<<PKGBUILDDIR>>/genomicsdb-tiledb/core/include/c_api
-I/usr/lib/x86_64-linux-gnu/openmpi/include
-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi
-I/<<PKGBUILDDIR>>/src/main/cpp/include/genomicsdb
-I/<<PKGBUILDDIR>>/src/main/cpp/include/loader
-I/<<PKGBUILDDIR>>/src/main/cpp/include/query_operations
-I/<<PKGBUILDDIR>>/src/main/cpp/include/utils
-I/<<PKGBUILDDIR>>/src/main/cpp/include/vcf
-I/<<PKGBUILDDIR>>/src/main/cpp/include/config
-I/<<PKGBUILDDIR>>/src/main/cpp/include/api
-I/<<PKGBUILDDIR>>/src/test/cpp/include
-I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/resources -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17
-fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas
-Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp
-fPIC -MD -MT
src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o
-MF
CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o.d
-o
CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o
-c
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/resources/genomicsdb_export_config.pb.cc
In file included from /usr/include/spdlog/fmt/fmt.h:31,
from /usr/include/spdlog/common.h:50,
from /usr/include/spdlog/spdlog.h:12,
from
/<<PKGBUILDDIR>>/src/main/cpp/include/utils/genomicsdb_logger.h:41,
from
/<<PKGBUILDDIR>>/src/main/cpp/include/loader/tiledb_loader_file_base.h:31,
from
/<<PKGBUILDDIR>>/src/main/cpp/include/loader/tiledb_loader.h:29:
/usr/include/fmt/core.h: In instantiation of ‘constexpr
fmt::v10::detail::value<Context> fmt::v10::detail::make_arg(T&) [with bool
PACKED = true; Context = fmt::v10::basic_format_context<fmt::v10::appender,
char>; T = const VidFileTypeEnum; typename std::enable_if<PACKED, int>::type
<anonymous> = 0]’:
/usr/include/fmt/core.h:1808:51: required from ‘constexpr
fmt::v10::format_arg_store<Context, Args>::format_arg_store(T& ...) [with T =
{const VidFileTypeEnum}; Context =
fmt::v10::basic_format_context<fmt::v10::appender, char>; Args =
{VidFileTypeEnum}]’
1808 | data_{detail::make_arg<is_packed, Context>(args)...} {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/include/fmt/core.h:1826:18: required from ‘void
spdlog::logger::log_(spdlog::source_loc, spdlog::level::level_enum,
spdlog::string_view_t, Args&& ...) [with Args = {const VidFileTypeEnum&};
spdlog::string_view_t = fmt::v10::basic_string_view<char>]’
1826 | return {args...};
| ^
/usr/include/spdlog/logger.h:90:13: required from ‘void
spdlog::logger::log(spdlog::source_loc, spdlog::level::level_enum,
fmt::v10::format_string<T ...>, Args&& ...) [with Args = {const
VidFileTypeEnum&}; fmt::v10::format_string<T ...> =
fmt::v10::basic_format_string<char, const VidFileTypeEnum&>]’
90 | log_(loc, lvl, details::to_string_view(fmt),
std::forward<Args>(args)...);
|
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/spdlog/logger.h:96:12: required from ‘void
spdlog::logger::log(spdlog::level::level_enum, fmt::v10::format_string<T ...>,
Args&& ...) [with Args = {const VidFileTypeEnum&}; fmt::v10::format_string<T
...> = fmt::v10::basic_format_string<char, const VidFileTypeEnum&>]’
96 | log(source_loc{}, lvl, fmt, std::forward<Args>(args)...);
| ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/spdlog/logger.h:170:12: required from ‘void
spdlog::logger::error(fmt::v10::format_string<T ...>, Args&& ...) [with Args =
{const VidFileTypeEnum&}; fmt::v10::format_string<T ...> =
fmt::v10::basic_format_string<char, const VidFileTypeEnum&>]’
170 | log(level::err, fmt, std::forward<Args>(args)...);
| ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/main/cpp/include/utils/genomicsdb_logger.h:113:20:
required from ‘void Logger::fatal(const T&, const char*, const Args& ...) [with
T = VCF2TileDBException; Args = {VidFileTypeEnum}]’
113 | m_logger->error(fmt, args...);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/main/cpp/src/loader/tiledb_loader.cc:252:17: required
from here
252 | logger.fatal(VCF2TileDBException(), "Unknown file type: {}",
file_info.m_type);
|
~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/spdlog/logger.h:374:75: in ‘constexpr’ expansion of
‘fmt::v10::make_format_args<>(args#0)’
/usr/include/fmt/core.h:1576:63: error:
‘fmt::v10::detail::type_is_unformattable_for<const VidFileTypeEnum, char> _’
has incomplete type
1576 | type_is_unformattable_for<T, typename Context::char_type> _;
| ^
/usr/include/fmt/core.h:1580:7: error: static assertion failed: Cannot format
an argument. To make type T formattable provide a formatter<T> specialization:
https://fmt.dev/latest/api.html#udt
1580 | formattable,
| ^~~~~~~~~~~
/usr/include/fmt/core.h:1580:7: note: ‘formattable’ evaluates to false
--
Thanks,
Shengqi Chen
