Hi Emmanuel, For information, the insighttoolkit 5.4 transition is ongoing, and apparently it causes a regression in camitk.
Steve M. Robbins, on 2025-01-31:
> At present, ITK 5.4 is available in experimental.
>
> I have done a test-rebuild locally of camitk, which failed one test:
>
>
> The following tests FAILED:
> 188 - component-itkimage-level3-19 (Failed) component-
> itkimage
> Errors while running CTest
As far as I can see, the detail of the test error looks like:
188: Starting the camitk default application...
188: QStandardPaths: XDG_RUNTIME_DIR not set, defaulting to
'/tmp/runtime-sbuild'
188: Failed to create /sbuild-nonexistent for shader cache (Permission
denied)---disabling.
188: Failed to create /sbuild-nonexistent for shader cache (Permission
denied)---disabling.
188: [OK]
188: Loading extension:
/build/reproducible-path/camitk-5.2.0/camitk-build/lib/x86_64-linux-gnu/camitk-5.2/components/libitkimage.so...
188: Loaded extension: ItkImages Component (Manage any file type
supported by itk and not by vtk in <b>CamiTK</b>.<br/>For
more info about image data format: <a
href="http://www.dclunie.com/medical-image-faq/html";>http://www.dclunie.com/medical-image-faq/html</a><br/><ul><li>hdr
is the Analyse header file format</li><li>spr is the Stimulate
header file format</li><li>gipl is the Guys Image Processing Lab
Format</li><li>pic is the Bio-Rad file format, used by confocal
micropscopes like MRC 1024 and MRC 600</li><li>LSM is a line of
confocal laser scanning microscopes produced by the Zeiss
company</li><li>Nrrd is the "Nearly Raw Raster
Data"</li><li>NIfTI-1 (.nii) is adapted from the widely used
ANALYZE 7.5 file format. For more info about image data format:
<a
href="http://nifti.nimh.nih.gov/nifti-1/";>http://nifti.nimh.nih.gov/nifti-1/</a>
</li></ul>). Managed extension:hdr, spr, gipl, pic, lsm, nrrd,
hdr.gz, nii, nii.gz, img, img.gz
188: [OK]
188: Opening component: LittleEndianZ.hdr...
188: [OK]
188: Saving component to: LittleEndianZ.hdr...
188: [OK]
188: Closing component: LittleEndianZ.hdr...
188: [OK]
188: -- Comparing file
"/build/reproducible-path/camitk-5.2.0/camitk-build/share/camitk-5.2/testdata/LittleEndianZ.hdr"
to
"/build/reproducible-path/camitk-5.2.0/camitk-build/Testing/Temporary/component-itkimage-level3-19/LittleEndianZ.hdr"...
188: -- [FAIL]
188: CMake Error at
/build/reproducible-path/camitk-5.2.0/sdk/cmake/modules/macros/camitk/test/CamiTKTestCompareFile.cmake:47
(message):
188: component-itkimage-level3-19:
188:
/build/reproducible-path/camitk-5.2.0/camitk-build/Testing/Temporary/component-itkimage-level3-19/LittleEndianZ.hdr
188: does not match
188:
/build/reproducible-path/camitk-5.2.0/camitk-build/share/camitk-5.2/testdata/LittleEndianZ.hdr
The faulty header looks like:
# xxd <
/build/reproducible-path/camitk-5.2.0/camitk-build/Testing/Temporary/component-itkimage-level3-19/LittleEndianZ.hdr
00000000: 5c01 0000 0000 0000 0000 0000 0000 0000 \...............
00000010: 0000 0000 0000 0000 0000 0000 0000 0000 ................
00000020: 0000 0000 0000 7200 0300 0600 0600 0800 ......r.........
00000030: 0100 0100 0100 0100 0000 0000 0000 0000 ................
00000040: 0000 0000 0000 0400 1000 0000 0000 803f ...............?
00000050: 0000 803f 0000 803f 0000 803f 0000 0000 ...?...?...?....
00000060: 0000 0000 0000 0000 0000 0000 0000 0000 ................
00000070: 0000 803f 0000 0000 0000 000a 0000 0000 ...?............
00000080: 0000 0000 0000 0000 0000 0000 0000 0000 ................
00000090: 0000 0000 0000 0000 0000 0000 0000 0000 ................
000000a0: 0000 0000 0000 0000 0000 0000 0000 0000 ................
000000b0: 0000 0000 0000 0000 0000 0000 0000 0000 ................
000000c0: 0000 0000 0000 0000 0000 0000 0000 0000 ................
000000d0: 0000 0000 0000 0000 0000 0000 0000 0000 ................
000000e0: 0000 0000 0000 0000 0000 0000 0000 0000 ................
000000f0: 0000 0000 0000 0000 0000 0000 0100 0100 ................
00000100: 0000 0000 0000 0000 0000 803f 0000 0080 ...........?....
00000110: 0000 0080 0000 0000 0000 80bf 0000 0000 ................
00000120: 0000 0000 0000 0080 0000 0000 0000 80bf ................
00000130: 0000 0000 0000 0080 0000 0000 0000 0000 ................
00000140: 0000 803f 0000 0000 0000 0000 0000 0000 ...?............
00000150: 0000 0000 0000 0000 6e69 3100 0000 0000 ........ni1.....
To be compared to reference data:
$ xxd < ./camitk/imaging/components/itkimage/testdata/LittleEndianZ.hdr
00000000: 5c01 0000 0000 0000 0000 0000 0000 0000 \...............
00000010: 0000 0000 0000 0000 0000 0000 0000 0000 ................
00000020: 0000 0000 0000 7200 0300 0600 0600 0800 ......r.........
00000030: 0100 0100 0100 0100 0000 0000 0000 0000 ................
00000040: 0000 0000 0000 0400 1000 0000 0000 803f ...............?
00000050: 0000 803f 0000 803f 0000 803f 0000 0000 ...?...?...?....
00000060: 0000 0000 0000 0000 0000 0000 0000 0000 ................
00000070: 0000 803f 0000 0000 0000 0002 0000 0000 ...?............
00000080: 0000 0000 0000 0000 0000 0000 0000 0000 ................
00000090: 0000 0000 0000 0000 0000 0000 0000 0000 ................
000000a0: 0000 0000 0000 0000 0000 0000 0000 0000 ................
000000b0: 0000 0000 0000 0000 0000 0000 0000 0000 ................
000000c0: 0000 0000 0000 0000 0000 0000 0000 0000 ................
000000d0: 0000 0000 0000 0000 0000 0000 0000 0000 ................
000000e0: 0000 0000 0000 0000 0000 0000 0000 0000 ................
000000f0: 0000 0000 0000 0000 0000 0000 0100 0100 ................
00000100: 0000 0000 0000 0000 0000 803f 0000 0080 ...........?....
00000110: 0000 0080 0000 0000 0000 80bf 0000 0000 ................
00000120: 0000 0000 0000 0080 0000 0000 0000 80bf ................
00000130: 0000 0000 0000 0080 0000 0000 0000 0000 ................
00000140: 0000 803f 0000 0000 0000 0000 0000 0000 ...?............
00000150: 0000 0000 0000 0000 6e69 3100 0000 0000 ........ni1.....
The difference is around offset 0x70:
v
00000070: 0000 803f 0000 0000 0000 000a 0000 0000 ...?............
|
00000070: 0000 803f 0000 0000 0000 0002 0000 0000 ...?............
^
I'm afraid that I am not competent to dig deeper into resolving
the issue properly. I don't believe this is a big deal given
the coverage of the test suite, but I prefer asking first.
Please could you have a look?
Have a nice day, :)
--
.''`. Étienne Mollier <[email protected]>
: :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da
`. `' sent from my alarm clock
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