Source: libmstoolkit Version: 82-7.2 Severity: minor Tags: trixie sid ftbfs User: [email protected] Usertags: ftbfs-shuffle
Hi, GNU Make now has a --shuffle option that simulates non-deterministic ordering of target prerequisites. See https://trofi.github.io/posts/238-new-make-shuffle-mode.html and also previous work in Debian by Santiago Vila: https://people.debian.org/~sanvila/make-shuffle/ This package fails to build with make --shuffle=reverse. This is likely to be caused by a missing dependency in debian/rules or an upstream Makefile. More information about this mass bug filing is available at https://wiki.debian.org/qa.debian.org/FTBFS/Shuffle Relevant part (hopefully): > make[3]: Entering directory '/build/reproducible-path/libmstoolkit-82' > Makefile:88: update target 'MSReaderLite.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H -D_NOSQLITE ./src/MSToolkit/MSReader.cpp -c -o > MSReaderLite.o > Makefile:85: update target 'MSReader.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H ./src/MSToolkit/MSReader.cpp -c > Makefile:97: update target 'pepXMLWriter.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H ./src/MSToolkit/pepXMLWriter.cpp -c > Makefile:94: update target 'mzMLWriter.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H ./src/MSToolkit/mzMLWriter.cpp -c > ./src/MSToolkit/mzMLWriter.cpp: In member function ‘bool > MSToolkit::MzMLWriter::writeSpectra(MSToolkit::MSObject&)’: > ./src/MSToolkit/mzMLWriter.cpp:260:1: warning: no return statement in > function returning non-void [-Wreturn-type] > 260 | } > | ^ > Makefile:91: update target 'MSObject.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H ./src/MSToolkit/MSObject.cpp -c > Makefile:82: update target 'Spectrum.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H ./src/MSToolkit/Spectrum.cpp -c > Makefile:76: update target 'mzp.PWIZface_lite.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/PWIZface.cpp -c -o > mzp.PWIZface_lite.o > Makefile:76: update target 'mzp.BasicChromatogram_lite.o' due to: target does > not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/BasicChromatogram.cpp -c -o > mzp.BasicChromatogram_lite.o > Makefile:76: update target 'mzp.mzpMz5Structs_lite.o' due to: target does not > exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzpMz5Structs.cpp -c -o > mzp.mzpMz5Structs_lite.o > Makefile:76: update target 'mzp.mzpMz5Config_lite.o' due to: target does not > exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzpMz5Config.cpp -c -o > mzp.mzpMz5Config_lite.o > Makefile:76: update target 'mzp.mz5handler_lite.o' due to: target does not > exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mz5handler.cpp -c -o > mzp.mz5handler_lite.o > Makefile:76: update target 'mzp.Czran_lite.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/Czran.cpp -c -o mzp.Czran_lite.o > Makefile:76: update target 'mzp.saxmzxmlhandler_lite.o' due to: target does > not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxmzxmlhandler.cpp -c -o > mzp.saxmzxmlhandler_lite.o > Makefile:76: update target 'mzp.saxmzmlhandler_lite.o' due to: target does > not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxmzmlhandler.cpp -c -o > mzp.saxmzmlhandler_lite.o > Makefile:76: update target 'mzp.saxhandler_lite.o' due to: target does not > exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxhandler.cpp -c -o > mzp.saxhandler_lite.o > Makefile:76: update target 'mzp.RAMPface_lite.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/RAMPface.cpp -c -o > mzp.RAMPface_lite.o > Makefile:76: update target 'mzp.mzParser_lite.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzParser.cpp -c -o > mzp.mzParser_lite.o > Makefile:76: update target 'mzp.BasicSpectrum_lite.o' due to: target does not > exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/BasicSpectrum.cpp -c -o > mzp.BasicSpectrum_lite.o > Makefile:76: update target 'mzp.mzp_base64_lite.o' due to: target does not > exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzp_base64.cpp -c -o > mzp.mzp_base64_lite.o > src/mzParser/mzp_base64.cpp: In function ‘int b64_decode_mio(char*, char*, > size_t)’: > src/mzParser/mzp_base64.cpp:125:30: warning: ISO C++17 does not allow > ‘register’ storage class specifier [-Wregister] > 125 | int register a; > | ^ > src/mzParser/mzp_base64.cpp:126:30: warning: ISO C++17 does not allow > ‘register’ storage class specifier [-Wregister] > 126 | int register b; > | ^ > Makefile:72: update target 'mzp.MSNumpress.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/MSNumpress.cpp -c -o > mzp.MSNumpress.o > Makefile:72: update target 'mzp.PWIZface.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/PWIZface.cpp -c -o mzp.PWIZface.o > Makefile:72: update target 'mzp.BasicChromatogram.o' due to: target does not > exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/BasicChromatogram.cpp -c -o > mzp.BasicChromatogram.o > Makefile:72: update target 'mzp.mzpMz5Structs.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzpMz5Structs.cpp -c -o > mzp.mzpMz5Structs.o > Makefile:72: update target 'mzp.mzpMz5Config.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzpMz5Config.cpp -c -o > mzp.mzpMz5Config.o > Makefile:72: update target 'mzp.mz5handler.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mz5handler.cpp -c -o > mzp.mz5handler.o > Makefile:72: update target 'mzp.Czran.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/Czran.cpp -c -o mzp.Czran.o > Makefile:72: update target 'mzp.saxmzxmlhandler.o' due to: target does not > exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxmzxmlhandler.cpp -c -o > mzp.saxmzxmlhandler.o > Makefile:72: update target 'mzp.saxmzmlhandler.o' due to: target does not > exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxmzmlhandler.cpp -c -o > mzp.saxmzmlhandler.o > Makefile:72: update target 'mzp.saxhandler.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/saxhandler.cpp -c -o > mzp.saxhandler.o > Makefile:72: update target 'mzp.RAMPface.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/RAMPface.cpp -c -o mzp.RAMPface.o > Makefile:72: update target 'mzp.mzParser.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzParser.cpp -c -o mzp.mzParser.o > Makefile:72: update target 'mzp.BasicSpectrum.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/BasicSpectrum.cpp -c -o > mzp.BasicSpectrum.o > Makefile:72: update target 'mzp.mzp_base64.o' due to: target does not exist > g++ -O3 -static -g -I. -I./include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 > -DGCC -DHAVE_EXPAT_CONFIG_H src/mzParser/mzp_base64.cpp -c -o > mzp.mzp_base64.o > src/mzParser/mzp_base64.cpp: In function ‘int b64_decode_mio(char*, char*, > size_t)’: > src/mzParser/mzp_base64.cpp:125:30: warning: ISO C++17 does not allow > ‘register’ storage class specifier [-Wregister] > 125 | int register a; > | ^ > src/mzParser/mzp_base64.cpp:126:30: warning: ISO C++17 does not allow > ‘register’ storage class specifier [-Wregister] > 126 | int register b; > | ^ > Makefile:62: update target 'clean_objects' due to: target does not exist > rm -f *.o msSingleScan.* > Makefile:38: update target 'arlib' due to: target does not exist > ar rcs libmstoolkitlite.a mzp.MSNumpress.o mzp.mzp_base64_lite.o > mzp.BasicSpectrum_lite.o mzp.mzParser_lite.o mzp.RAMPface_lite.o > mzp.saxhandler_lite.o mzp.saxmzmlhandler_lite.o mzp.saxmzxmlhandler_lite.o > mzp.Czran_lite.o mzp.mz5handler_lite.o mzp.mzpMz5Config_lite.o > mzp.mzpMz5Structs_lite.o mzp.BasicChromatogram_lite.o mzp.PWIZface_lite.o > Spectrum.o MSObject.o mzMLWriter.o pepXMLWriter.o MSReaderLite.o > ar: mzp.MSNumpress.o: No such file or directory > make[3]: *** [Makefile:39: arlib] Error 1 shuffle=reverse The full build log is available from: http://qa-logs.debian.net/2025/05/05/shuffle/reverse/libmstoolkit_82-7.2_unstable_reverse.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects
