Package: src:delly
Version: 1.1.8-1
Severity: important
Tags: sid forky
User: [email protected]
Usertags: boost1.88
[...]
g++ -g -O3 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -flto=auto
-ffat-lto-objects -fstack-protector-strong -Wformat
-Werror=format-security -fno-stack-clash-protection
-fdebug-prefix-map=/<<PKGBUILDDIR>>=/usr/src/delly-1.1.8-1build6
-Wdate-time -D_FORTIFY_SOURCE=3 -std=c++11 -isystem /usr/include/htslib/
-pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS
-fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3
-fno-tree-vectorize -DNDEBUG src/delly.cpp src/edlib.cpp -o src/delly
-Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro
-Wl,-z,now -L/usr/include/htslib/ -lboost_iostreams -lboost_filesystem
-lboost_system -lboost_program_options -lboost_date_time -lhts -lz
-llzma -lbz2 -Wl,-rpath,/usr/include/htslib/
In file included from /usr/include/boost/math/special_functions/pow.hpp:16,
from src/delly.h:19,
from src/delly.cpp:18:
/usr/include/boost/math/tools/config.hpp:28:6: warning: #warning
"Boost.Math requires C++14" [-Wcpp]
28 | # warning "Boost.Math requires C++14"
| ^~~~~~~
In file included from /usr/include/boost/math/tools/mp.hpp:15,
from /usr/include/boost/math/policies/policy.hpp:11,
from /usr/include/boost/math/special_functions/pow.hpp:17:
/usr/include/boost/math/tools/type_traits.hpp:208:12: error: ‘is_final’
has not been declared in ‘std’
208 | using std::is_final;
| ^~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:259:12: error:
‘remove_cv_t’ has not been declared in ‘std’
259 | using std::remove_cv_t;
| ^~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:261:12: error:
‘remove_const_t’ has not been declared in ‘std’
261 | using std::remove_const_t;
| ^~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:263:12: error:
‘remove_volatile_t’ has not been declared in ‘std’
263 | using std::remove_volatile_t;
| ^~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:265:12: error: ‘add_cv_t’
has not been declared in ‘std’
265 | using std::add_cv_t;
| ^~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:267:12: error:
‘add_const_t’ has not been declared in ‘std’
267 | using std::add_const_t;
| ^~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:269:12: error:
‘add_volatile_t’ has not been declared in ‘std’
269 | using std::add_volatile_t;
| ^~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:273:12: error:
‘remove_reference_t’ has not been declared in ‘std’
273 | using std::remove_reference_t;
| ^~~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:275:12: error:
‘add_lvalue_reference_t’ has not been declared in ‘std’
275 | using std::add_lvalue_reference_t;
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:277:12: error:
‘add_rvalue_reference_t’ has not been declared in ‘std’
277 | using std::add_rvalue_reference_t;
| ^~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:281:12: error:
‘remove_pointer_t’ has not been declared in ‘std’
281 | using std::remove_pointer_t;
| ^~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:283:12: error:
‘add_pointer_t’ has not been declared in ‘std’
283 | using std::add_pointer_t;
| ^~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:287:12: error:
‘make_signed_t’ has not been declared in ‘std’
287 | using std::make_signed_t;
| ^~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:289:12: error:
‘make_unsigned_t’ has not been declared in ‘std’
289 | using std::make_unsigned_t;
| ^~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:293:12: error:
‘remove_extent_t’ has not been declared in ‘std’
293 | using std::remove_extent_t;
| ^~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:295:12: error:
‘remove_all_extents_t’ has not been declared in ‘std’
295 | using std::remove_all_extents_t;
| ^~~~~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:299:12: error: ‘decay_t’
has not been declared in ‘std’
299 | using std::decay_t;
| ^~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:301:12: error:
‘enable_if_t’ has not been declared in ‘std’
301 | using std::enable_if_t;
| ^~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:303:12: error:
‘conditional_t’ has not been declared in ‘std’
303 | using std::conditional_t;
| ^~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:305:12: error:
‘common_type_t’ has not been declared in ‘std’
305 | using std::common_type_t;
| ^~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:307:12: error:
‘underlying_type_t’ has not been declared in ‘std’
307 | using std::underlying_type_t;
| ^~~~~~~~~~~~~~~~~
/usr/include/boost/math/tools/type_traits.hpp:402:60: error: ‘is_final’
is not a member of ‘boost::math’; did you mean ‘is_final_v’?
402 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v =
boost::math::is_final<T>::value;
| ^~~~~~~~
|
is_final_v
/usr/include/boost/math/tools/type_traits.hpp:402:70: error: expected
primary-expression before ‘>’ token
402 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v =
boost::math::is_final<T>::value;
|
^
/usr/include/boost/math/tools/type_traits.hpp:402:73: error: ‘::value’
has not been declared
402 | BOOST_MATH_INLINE_CONSTEXPR bool is_final_v =
boost::math::is_final<T>::value;
|
^~~~~
/usr/include/boost/math/tools/type_traits.hpp:402:73: note: suggested
alternatives:
In file included from
/usr/include/boost/xpressive/detail/core/access.hpp:18,
from
/usr/include/boost/xpressive/detail/core/state.hpp:18,
from
/usr/include/boost/xpressive/detail/core/matcher/alternate_end_matcher.hpp:20,
from
/usr/include/boost/xpressive/detail/core/matchers.hpp:17,
from /usr/include/boost/xpressive/regex_primitives.hpp:22,
from /usr/include/boost/xpressive/xpressive_static.hpp:24,
from /usr/include/boost/graph/graphviz.hpp:36,
from src/delly.h:9:
/usr/include/boost/proto/traits.hpp:1161:5: note: ‘boost::proto::value’
1161 | value(Expr const &e)
| ^~~~~
In file included from /usr/include/boost/xpressive/detail/detail_fwd.hpp:24,
from /usr/include/boost/xpressive/regex_primitives.hpp:21:
/usr/include/boost/xpressive/xpressive_fwd.hpp:134:12: note:
‘boost::xpressive::value’
134 | struct value;
| ^~~~~
In file included from
/usr/include/boost/program_options/value_semantic.hpp:421,
from
/usr/include/boost/program_options/options_description.hpp:13,
from src/delly.h:14:
/usr/include/boost/program_options/detail/value_semantic.hpp:197:5:
note: ‘boost::program_options::value’
197 | value(T* v)
| ^~~~~
/usr/include/boost/proto/traits.hpp:294:16: note:
‘boost::proto::result_of::value’
294 | struct value
| ^~~~~
/usr/include/boost/proto/traits.hpp:824:16: note:
‘boost::proto::functional::value’
824 | struct value
| ^~~~~
/usr/include/boost/math/special_functions/pow.hpp:126:79: error:
redeclaration ‘constexpr typename
boost::math::tools::promote_args<T2>::type boost::math::pow(T, const
Policy&)’ differs in ‘constexpr’ from previous declaration
126 | BOOST_MATH_GPU_ENABLED constexpr inline typename
tools::promote_args<T>::type pow(T base, const Policy& policy)
|
^~~
In file included from /usr/include/boost/math/special_functions/pow.hpp:22:
/usr/include/boost/math/special_functions/math_fwd.hpp:1173:79: note:
previous declaration ‘boost::math::tools::promote_args_t<T>
boost::math::pow(T, const Policy&)’
1173 | BOOST_MATH_GPU_ENABLED BOOST_MATH_CXX14_CONSTEXPR
tools::promote_args_t<T> pow(T base, const Policy& policy);
|
^~~
/usr/include/boost/math/special_functions/pow.hpp:133:79: error:
redeclaration ‘constexpr typename
boost::math::tools::promote_args<T2>::type boost::math::pow(T)’ differs
in ‘constexpr’ from previous declaration
133 | BOOST_MATH_GPU_ENABLED constexpr inline typename
tools::promote_args<T>::type pow(T base)
|
^~~
/usr/include/boost/math/special_functions/math_fwd.hpp:1176:79: note:
previous declaration ‘boost::math::tools::promote_args_t<T>
boost::math::pow(T)’
1176 | BOOST_MATH_GPU_ENABLED BOOST_MATH_CXX14_CONSTEXPR
tools::promote_args_t<T> pow(T base);
|
^~~
In file included from src/util.h:15,
from src/delly.h:32:
src/tags.h:76:32: warning: ‘template<class _Arg1, class _Arg2, class
_Result> struct std::binary_function’ is deprecated
[-Wdeprecated-declarations]
76 | struct SortSVs : public std::binary_function<TSV, TSV, bool>
| ^~~~~~~~~~~~~~~
