Source: r-cran-bold Version: 1.3.0-1 Severity: serious User: [email protected] Usertags: regression
Dear maintainer(s),Your package has an autopkgtest, great. However, it fails. Can you please investigate the situation and fix it? I copied some of the output at the bottom of this report.
The release team has announced [1] that failing autopkgtest on amd64 and arm64 are considered RC in testing.
More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul [1] https://lists.debian.org/debian-devel-announce/2019/07/msg00002.html https://ci.debian.net/packages/r/r-cran-bold/testing/amd64/62856313/ 41s autopkgtest [00:04:53]: test run-unit-test: [----------------------- 41s 41s R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six" 41s Copyright (C) 2025 The R Foundation for Statistical Computing 41s Platform: x86_64-pc-linux-gnu 41s 41s R is free software and comes with ABSOLUTELY NO WARRANTY. 41s You are welcome to redistribute it under certain conditions. 41s Type 'license()' or 'licence()' for distribution details. 41s 41s R is a collaborative project with many contributors. 41s Type 'contributors()' for more information and 41s 'citation()' on how to cite R or R packages in publications. 41s 41s Type 'demo()' for some demos, 'help()' for on-line help, or 41s 'help.start()' for an HTML browser interface to help. 41s Type 'q()' to quit R. 41s 41s > library(testthat) 41s > test_check('bold') 41s Loading required package: bold 47s [ FAIL 2 | WARN 22 | SKIP 59 | PASS 111 ] 47s47s == Skipped tests (59) ========================================================== 48s * On CRAN (59): 'test-bold_get_attr.R:2:3', 'test-bold_identify.R:4:3',
48s 'test-bold_identify.R:14:3', 'test-bold_identify.R:25:3',48s 'test-bold_identify.R:39:3', 'test-bold_seq.R:5:3', 'test-bold_seq.R:18:3',
48s 'test-bold_seq.R:30:3', 'test-bold_seqspec.R:4:3', 48s 'test-bold_seqspec.R:14:3', 'test-bold_seqspec.R:25:3', 48s 'test-bold_seqspec.R:36:3', 'test-bold_seqspec.R:47:3', 48s 'test-bold_specimens.R:4:3', 'test-bold_specimens.R:14:3', 48s 'test-bold_specimens.R:24:3', 'test-bold_specimens.R:34:3',48s 'test-bold_stats.R:4:3', 'test-bold_stats.R:16:3', 'test-bold_stats.R:30:3', 48s 'test-bold_stats.R:40:3', 'test-bold_stats.R:50:3', 'test-bold_tax_id.R:4:3',
48s 'test-bold_tax_id.R:16:3', 'test-bold_tax_id.R:25:3', 48s 'test-bold_tax_id.R:35:3', 'test-bold_tax_id.R:44:3', 48s 'test-bold_tax_id.R:57:3', 'test-bold_tax_id.R:65:3', 48s 'test-bold_tax_id.R:73:3', 'test-bold_tax_id.R:82:3', 48s 'test-bold_tax_id.R:90:3', 'test-bold_tax_id.R:98:3', 48s 'test-bold_tax_id.R:106:3', 'test-bold_tax_id.R:114:3', 48s 'test-bold_tax_id2.R:4:3', 'test-bold_tax_id2.R:16:3', 48s 'test-bold_tax_id2.R:25:3', 'test-bold_tax_id2.R:41:3', 48s 'test-bold_tax_id2.R:56:3', 'test-bold_tax_id2.R:64:3', 48s 'test-bold_tax_id2.R:72:3', 'test-bold_tax_id2.R:81:3', 48s 'test-bold_tax_id2.R:90:3', 'test-bold_tax_id2.R:102:3', 48s 'test-bold_tax_id2.R:114:3', 'test-bold_tax_id2.R:126:3', 48s 'test-bold_tax_id2.R:134:3', 'test-bold_tax_name.R:4:3', 48s 'test-bold_tax_name.R:13:3', 'test-bold_tax_name.R:22:3', 48s 'test-bold_tax_name.R:43:3', 'test-bold_tax_name.R:53:3', 48s 'test-bold_tax_name.R:68:3', 'test-bold_tax_name.R:79:3',48s 'test-bold_trace.R:4:3', 'test-bold_trace.R:17:3', 'test-bold_trace.R:30:3',
48s 'test-bold_trace.R:42:3' 48s48s == Failed tests ================================================================ 48s -- Failure ('test-bold_filter.R:26:3'): bold_filter works as expected ----------
48s `test` inherits from `'matrix'/'array'` not `'character'`.48s -- Error ('test-bold_filter.R:29:3'): bold_filter works as expected ------------
48s Error in `test$species_name`: $ operator is invalid for atomic vectors 48s Backtrace: 48s x48s 1. +-testthat::expect_equal(length(unique(test$species_name)), NROW(test)) at test-bold_filter.R:29:3
48s 2. | \-testthat::quasi_label(enquo(object), label, arg = "object") 48s 3. | \-rlang::eval_bare(expr, quo_get_env(quo)) 48s 4. \-base::unique(test$species_name) 48s 48s [ FAIL 2 | WARN 22 | SKIP 59 | PASS 111 ] 48s Error: Test failures 48s Execution halted 48s Ran 12/12 deferred expressions 48s autopkgtest [00:05:00]: test run-unit-test: -----------------------]
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