Package: release.debian.org Severity: normal Tags: trixie X-Debbugs-Cc: [email protected], [email protected], [email protected] Control: affects -1 + src:r-bioc-beachmat User: [email protected] Usertags: pu
Hello, I am sorry that we could not fix for #1111758 on time for Trixie. As we can not migrate 2.22.0+ds-3 from Testing for the next point release, how about an upload with the following debdiff? [ Checklist ] [x] *all* changes are documented in the d/changelog [x] I reviewed all changes and I approve them [x] attach debdiff against the package in (old)stable [x] the issue is verified as fixed in unstable [ Changes ] index 068fccb..16ee884 100644 --- a/debian/changelog +++ b/debian/changelog @@ -1,3 +1,13 @@ +r-bioc-beachmat (2.22.0+ds-3~deb13u1) trixie; urgency=medium + + * Team upload. + + [ Michael R. Crusoe ] + * Patch up part of a test that depends on the "beachmat.hdf5" R + package, which is not yet in Debian. Closes: #1111758 + + -- Charles Plessy <[email protected]> Sun, 14 Sep 2025 16:38:29 +0900 + r-bioc-beachmat (2.22.0+ds-2) unstable; urgency=medium * Team upload. diff --git a/debian/patches/series b/debian/patches/series new file mode 100644 index 0000000..6183596 --- /dev/null +++ b/debian/patches/series @@ -0,0 +1 @@ +skip-missing-beachmat.hdf5 diff --git a/debian/patches/skip-missing-beachmat.hdf5 b/debian/patches/skip-missing-beachmat.hdf5 new file mode 100644 index 0000000..6dd66d2 --- /dev/null +++ b/debian/patches/skip-missing-beachmat.hdf5 @@ -0,0 +1,15 @@ +Author: Michael R. Crusoe <[email protected]> +Description: skip part of a test that depends on the unpackaged beachmat.hdf5 +Forwarded: not-needed +--- r-bioc-beachmat.orig/tests/testthat/test-initializeCpp-other.R ++++ r-bioc-beachmat/tests/testthat/test-initializeCpp-other.R +@@ -150,9 +150,6 @@ + + ptr <- initializeCpp(mat2) + am_i_ok(mat, ptr) +- +- # Package is automatically loaded to expose the specialized methods. +- expect_true(isNamespaceLoaded("beachmat.hdf5")) + }) + + test_that("initialization works correctly with an unknown DelayedArray", { Have a nice day, Charles -- Charles Plessy Nagahama, Yomitan, Okinawa, Japan Debian Med packaging team http://www.debian.org/devel/debian-med Tooting from work, https://fediscience.org/@charles_plessy Tooting from home, https://framapiaf.org/@charles_plessy
